Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2026
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 36 0.004
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 32 0.083
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 31 0.14
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 30 0.33
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 30 0.33
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 27 1.8
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 2.3
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 3.1
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 5.4
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.2
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.5
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 9.5
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 423 LDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMS-HLPAXGSSLDLINNLLRDVPSD 599
L ++ N + L + K LV L+ + N IK + L + L +N++ +P++
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAE 245
Query: 600 LGHLTSLEHLELEGNPL 650
LG L L+ L +EGNPL
Sbjct: 246 LGTLFQLKILGIEGNPL 262
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 31.9 bits (69), Expect = 0.083
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = +3
Query: 396 WIXLPEIXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK------ELAMSHLPAXGSS 557
++ L + +LDLS N + + L +L LNLA+N+I +++SHL S
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLS 411
Query: 558 LDLINNLLRDVPSDLGHLTSLEHLELEGNPL 650
+ + +L S L ++ SLE L++ N +
Sbjct: 412 RNHLTSL-----SGLENVPSLEKLDIRDNSI 437
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +3
Query: 399 IXLPEIXTLDLSTNGIQNLNKFLHNAK---KLVHLNLANNRIKELA 527
+ P++ ++ LS N +Q++ A+ KL++L+LANNRI L+
Sbjct: 211 LNFPDVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLS 256
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 29.9 bits (64), Expect = 0.33
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 387 IMSWIXLPEIXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE--LAMSHLPAXGSSL 560
I S + + L+++ N + L L +L+L+ N L ++ L +L
Sbjct: 495 IFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQL-ETL 553
Query: 561 DLINNLLRDVPSDLGHLTSLEHLELEGNPL 650
+ +NLL + S +G L L+HL L+ N L
Sbjct: 554 NFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +3
Query: 423 LDLSTNGIQNL------NKFLHNAKKLVHLNLANN 509
LD+STN +QNL K L +L +LNL+ N
Sbjct: 905 LDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.9 bits (64), Expect = 0.33
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 405 LPEIXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPAXG-SSLDLINNLL 581
L + L + +N + +L+ H L+ L+ NNRIKEL+ ++ L L NN +
Sbjct: 689 LIHLRELKVDSNHLWSLDGIQH-LDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEI 747
Query: 582 RDVPSDLGHLTSLEHLELEGNPL 650
++ ++ L +L L+L+ N L
Sbjct: 748 EEI-EEISSLQNLMVLQLDNNKL 769
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 501 LSLNAPIFLHYVRICSSSEYHW*TDQAXQFRVTXSNS*SNLVILW-WERSKI 349
+ L+ P+++HY + S+ YH + Q+ N ++L LW W +
Sbjct: 39 VELDTPVYVHYAKYRSARFYHAFRNVRQQYAQVKFNMDADLSELWDWNTKHV 90
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 586 SLKRLLIKSNELPLAGKCDMASSFILLFAKFK 491
SL LL+K +++PL K D +S F L +F+
Sbjct: 341 SLFTLLVKLSDIPLDEKYDFSSRFSTLLLQFQ 372
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 414 IXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPAXG 551
I LDL+ NG+ L LH A + L ++ + +A +H+ A G
Sbjct: 244 IELLDLAPNGVSFLGNVLHPAGNIATF-LLSSGLGRVADNHISALG 288
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 553 LPLAGKCDMASSFILLFAKFKCTNFFALCKNL 458
+PL K D+ FI KFK F + CK +
Sbjct: 265 VPLTEKLDILFGFIRTHLKFKTIVFLSSCKQV 296
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/50 (22%), Positives = 28/50 (56%)
Frame = +2
Query: 317 VHPSPKHHNIXILDLSHHNITKLDHELDXVTRNXHA*SVYQWYSELEQIL 466
++P K H + L +H + KL+ E+ T+N +++Q++ +++ +
Sbjct: 259 IYPQIKPHLLSCLKNTHQELIKLETEVYNATKNC---TLFQFFQHVKKFV 305
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 405 LPEIXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELA--MSHLP 542
L + LD+S N I+ L + L L+++ NR+ EL ++H+P
Sbjct: 97 LESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMP 144
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 489 HLNLANNRIKELAMSHLPAXGSSLDLINNLLR 584
HL +NRI ++ +LP+ L+ + + LR
Sbjct: 606 HLTFLDNRIAVVSCDYLPSNSVQLNFVADFLR 637
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 249 SFRDRRLXSWEPLVVTP 199
SFR +R+ SW+PL +TP
Sbjct: 28 SFRQQRIKSWQPL-LTP 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,197
Number of Sequences: 5004
Number of extensions: 48521
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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