Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2026
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.63 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +3

Query: 414 IXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPAXGSSLDLINNLLRDV 590
           +  + L  N + ++N    +   L+ LNL+ N I+    + +P     LD+  N +  +
Sbjct: 528 LEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYAFIPGNLKWLDIHGNFIESL 586



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 411 EIXTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPAXGSSLDLINNLLRDV 590
           ++  LDLS N + ++   L +   L  L+L  NRI             +LD +   LR +
Sbjct: 432 DLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSF----RNLDQLTG-LRLI 486

Query: 591 PSDLGHLT 614
            +D+G+L+
Sbjct: 487 GNDIGNLS 494


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 555 SLDLINNLLRDVPSDLGHLTS 617
           S+D ++NL+  V +++ HLT+
Sbjct: 480 SVDRLDNLMAQVNTEMTHLTN 500


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 236 LSRKLRLQYYSRWLTSCHVQ 295
           LS K R +Y++R + S H Q
Sbjct: 248 LSNKQRFEYFTRTIPSDHYQ 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,492
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)