Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2025
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03700.1 68418.m00330 PAN domain-containing protein contains ...    29   3.1  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    27   7.2  

>At5g03700.1 68418.m00330 PAN domain-containing protein contains
           Pfam profile: PF00024 PAN domain
          Length = 482

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +2

Query: 134 DSCIDXCSYWCNIYIDXKSCCYL-----RIGFGFFTPEPLNYFKI 253
           + C+D C  +  +Y +    CYL     R   G   P  L YFK+
Sbjct: 365 EMCVDNCKCFGAVYNNGSGFCYLVNYPIRTMLGVADPSKLGYFKV 409


>At5g15580.1 68418.m01824 expressed protein unknown protein
          F14P3.18 - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 81 LYNFGDRTPNIKLFVGLNLGIFFTFF 4
          LYN  D  PN+   +G   GIF  F+
Sbjct: 6  LYNLSDENPNLNKQIGCMNGIFQVFY 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,052,186
Number of Sequences: 28952
Number of extensions: 135487
Number of successful extensions: 184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)