Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2021
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.4  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   4.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.9  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 352 TCTGETGKASGPPVILQS*KKNP*NCAVFCTCI 254
           T T E+G  S      +   ++P +C+V+ TC+
Sbjct: 430 TKTPESGNESDGVCTKEGIVRDPSDCSVYYTCV 462


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 399 QLLASSTPLGRAFARPPVLVKLERPPGHQ 313
           +LLA ST +   F R P+ +   R P HQ
Sbjct: 252 RLLAPSTEVSAPFFRQPLDLYNFRVPQHQ 280


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 277 CAVFCTCIRWVGHIYNLTINTLFA 206
           C V+ TC+  V  I   T  TL +
Sbjct: 8   CLVYATCVYSVSEISEETCETLMS 31


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 399 QLLASSTPLGRAFARPPVLVKLER 328
           QLL     +G+ FA  P  +KLE+
Sbjct: 4   QLLQIMFTIGKFFALTPRSIKLEK 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,609
Number of Sequences: 336
Number of extensions: 2606
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)