Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2021
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0765 + 31594483-31594691,31595577-31595748                       28   5.0  
11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489...    28   6.6  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   6.6  

>02_05_0765 + 31594483-31594691,31595577-31595748
          Length = 126

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 170 DDFDHRGNFGLCSKKCINC*IIYVSYPPNTCA 265
           D + +RG    CSK+C  C I Y       C+
Sbjct: 65  DTYIYRGEVAFCSKECRECVIEYYERKERNCS 96


>11_01_0610 +
           4889158-4889386,4889584-4890297,4890814-4891166,
           4891619-4891830,4892633-4892889,4892984-4893162,
           4893901-4893948
          Length = 663

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 343 QYRWASKGSAKRGGTC*QLPERLRRKPNSSRAPALRMNLLPDRSRDPLXXSGEKLGGLMY 522
           QYR +      RGG    LPE  R  P++S+   +R    P R R P   +      L+ 
Sbjct: 3   QYRQSGGFFDYRGGHHHALPEYHRPLPHASKPSRIRRPGKPARRRSPAAAAAVASALLLA 62

Query: 523 GVRL 534
           GV L
Sbjct: 63  GVFL 66


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 409 GARAAVSKFHPAWPSLCSPTCTGETGKASGPP 314
           G   A S+  P WP  C   C   +  +  PP
Sbjct: 29  GGTPAASRGLPGWPGFCGVGCGSSSSSSFAPP 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,504
Number of Sequences: 37544
Number of extensions: 282771
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)