Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2021
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     29   2.9  
SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                28   5.0  
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)           28   6.6  

>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 403 ERLR-RKPNSSRAPALRMNLLPDRSRDPLXXSGEKLGGL 516
           ERLR R P +   P +R+ LLPDR++     +G   G L
Sbjct: 643 ERLRSRYPENKTNPFVRLYLLPDRTKKTRRRTGAVRGSL 681


>SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 268 TQHSSKGFFFMIEVLLVARRPFQFHQYRWASKGSA 372
           T HS+KGFF  IE   VA     +    W   GSA
Sbjct: 97  TTHSNKGFFVYIEASRVAMGSKAWLSSDWMDPGSA 131


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 323 GGLSSFTSTGGRAKARPSGVELANSCPSASEGNLTAQEH 439
           G ++ +T+T   A   P GVE AN CP  +EGNL +  +
Sbjct: 416 GDIAGWTNTPV-ATIDPFGVE-ANQCPLGAEGNLLSSNN 452


>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
          Length = 721

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 295 KKNP*NCAVFCTCIRWVGHIYN 230
           K NP +C V CT I + GHI N
Sbjct: 367 KFNPDSCRVKCTSIPFYGHILN 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,130
Number of Sequences: 59808
Number of extensions: 303487
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)