Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2021
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z...    30   1.0  
At2g33280.1 68415.m04079 integral membrane transporter family pr...    27   9.5  

>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to hypothetical
           proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
           homeobox family protein GP|13374061 (Flaveria
           bidentis);GP:5091602 {Oryza sativa}
          Length = 279

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 394 QLPERLRRKPNSSRAPALRMNLLP---DRSRDPLXXSGEKLGG 513
           +LP  +  +P  S+AP L++ L P   +RS DP+  S  + GG
Sbjct: 146 RLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGG 188


>At2g33280.1 68415.m04079 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter
          Length = 408

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 332 SSFTSTGGRAKARPSGVELANSCPSASEGNLTA 430
           SS      + K  P  V LAN CP   EG++T+
Sbjct: 279 SSVAEILAQFKILPFSVLLANMCPGGCEGSITS 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,581
Number of Sequences: 28952
Number of extensions: 220858
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)