Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2019
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 21/64 (32%), Positives = 24/64 (37%)
 Frame = -2

Query: 457 GAPTPSQCISSVRIWRV*TIPRTCRSVDA*TSLVSSPRTRPGRGCFPFAVATPLAPESTN 278
           GAP+PS   SS+   R  T   T  S    TS  S P T        F  AT   P   +
Sbjct: 73  GAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDNS 132

Query: 277 RD*H 266
              H
Sbjct: 133 HVHH 136


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 643 LGLTEDFGFGMLGITSXLVIFXISXSGGPVGVRAMTSPTSFSFSV 509
           LGLTED     + + + +V + I    G V V  +    +  F +
Sbjct: 64  LGLTEDLNSAPIRMKNPIVKYIILIDLGEVAVTVLAGILTTPFKL 108


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 LESFIRAKYEQKKYIAKEWVP 456
           L  F++    + KY+  EWVP
Sbjct: 77  LLEFVQIDPHRWKYVNGEWVP 97


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 442 KEWVPPQLPKVNWDKEIDEEMD 507
           K + PP+LP V    E + E+D
Sbjct: 136 KPYTPPRLPTVYGKPEQNYEVD 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,131
Number of Sequences: 336
Number of extensions: 3297
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)