Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2019
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 128 7e-31
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 114 1e-26
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 92 7e-20
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 87 2e-18
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 84 2e-17
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 83 3e-17
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 0.77
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 5.4
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 7.2
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 128 bits (309), Expect = 7e-31
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 6/152 (3%)
Frame = +1
Query: 109 ILVQMLKDEDNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 285
+L +L++ NK C DC + PRWASWNLG+F+CIRC+G+HR+LGVH+S+VKSV+LDSW
Sbjct: 15 VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74
Query: 286 TPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP-PQ 462
T EQ ++ + GN RA +EA L +D + +FI+ KYE KK++ +P P+
Sbjct: 75 TDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVLYPEIPSPE 132
Query: 463 LPKVNWD----KEIDEEMDRQKRKKKSATSSL 546
K + E++ +D + S+ S+
Sbjct: 133 TLKPEQNTRPVSEVNASLDLNTASRSSSAHSV 164
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 114 bits (274), Expect = 1e-26
Identities = 59/147 (40%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Frame = +1
Query: 139 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQM 318
N C DC +G +WASWNLGIFLC+RCA IHR LG H+SKVKS++LD W+ +Q+ ++
Sbjct: 20 NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKMKHW 79
Query: 319 GNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYEQKKYI----AKEWVPPQLPKV 474
GN A + N P S P N +S +E +IR KYE+K ++ + PP LP
Sbjct: 80 GNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIRDKYERKLFLDENHSTNSKPPSLPPR 138
Query: 475 NWDKEIDEEMDRQKRKKKSATSSLGPL 555
M K SL L
Sbjct: 139 TKSSSQSSPMASTSTSKSRYADSLSTL 165
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 91.9 bits (218), Expect = 7e-20
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Frame = +1
Query: 106 NILVQMLKDED--NKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNL 276
NI +QML+ D N C DC + K W S N+ + LCI C+GIHR+LG HISK +S+ L
Sbjct: 714 NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLL 773
Query: 277 DSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP 456
DS + + V L ++GN+ VYE L + +P+ + + + ++ + QKKY+ ++
Sbjct: 774 DSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQ--VKLAFAQKKYVEHAFI- 830
Query: 457 PQLPKVNWDKEIDEEMDRQKRKK 525
V+ D + E +++ K K
Sbjct: 831 -DFAGVDADATLLEGLEQNKISK 852
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 87.4 bits (207), Expect = 2e-18
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +1
Query: 112 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTP 291
L Q+ + +NK C DCDA P+WAS NLGIF+C+ C+G HR LGV S V+S+ +D+W+
Sbjct: 5 LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64
Query: 292 EQVVSLQQMGNSRAR 336
QV ++ GNS A+
Sbjct: 65 RQVKMMEVGGNSNAK 79
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 83.8 bits (198), Expect = 2e-17
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +1
Query: 91 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKV--- 261
++ Q +L + DNK C DC AK P W+S GI+LC+ C+ HRN+GVHIS V
Sbjct: 5 KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFL 64
Query: 262 KSVNLDSWTPEQVVSLQQMGNSRARAVYE 348
+S LDSWT Q+ ++ GN AR ++
Sbjct: 65 RSTVLDSWTYAQLRVMRVGGNENARNYFK 93
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 83.0 bits (196), Expect = 3e-17
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Frame = +1
Query: 58 SKSEKDRAKQIQDRCQNILVQMLKD--EDNKYCVDCDAKGP-RWASWNLGIFLCIRCAGI 228
S+ D ++ Q + + LV+ LK+ ++ C DC+ W + N + LCI C+GI
Sbjct: 655 SRHNSDSKEKKQTKSPS-LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGI 713
Query: 229 HRNLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPD-SFRRPQNDMSLESF 405
HR+LG HI+K++S+ LD + PE V L GNS +YE + D + +N F
Sbjct: 714 HRSLGTHITKIRSLTLDKFNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRVQF 773
Query: 406 IRAKYEQKKYI 438
++ KY K++I
Sbjct: 774 VKDKYLYKRFI 784
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 406 IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEM 504
+R +Q K EW+ P + K W +E DE++
Sbjct: 37 VRKTPKQCKARWYEWIDPSIKKTEWSREEDEKL 69
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 620 FRYARYHVGTCYIXY 576
F +ARYH G CY+ +
Sbjct: 287 FGFARYHNGVCYLRF 301
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 326 LFPICCSDTTCSGVHESRLTLFTLEM*TPRFRWIPAQRMHRN 201
L I T CS V + LT F L+ + +FR++ HRN
Sbjct: 211 LLQILMEYTDCSNVRD--LTRFDLKRLSRKFRFLKVTCQHRN 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,004
Number of Sequences: 5004
Number of extensions: 55450
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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