Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2019
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 4e-19
SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015) 86 3e-17
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 72 5e-13
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11) 38 0.007
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 30 1.9
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 29 2.5
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05) 29 2.5
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 29 3.3
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 29 4.3
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_21868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24) 28 5.7
SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11) 28 5.7
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28) 28 7.6
SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28) 28 7.6
SB_2790| Best HMM Match : HSBP1 (HMM E-Value=0.15) 28 7.6
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 28 7.6
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 117 bits (281), Expect = 1e-26
Identities = 53/118 (44%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Frame = +1
Query: 94 DRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVN 273
++ +N L+++ K N C DC AK P WAS + GIF+CI C+G+HRNLG IS VKS+
Sbjct: 2 EKNRNALLELAKRPGNNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLR 61
Query: 274 LDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQ-NDMSL--ESFIRAKYEQKKYI 438
LD+WT E++ + + GN ++ A++ N+P +RRP+ D + E +IRAKYE+K++I
Sbjct: 62 LDTWTDERLQFMIENGNEKSNAIWAKNVPICYRRPKCTDPHVLREQWIRAKYERKEFI 119
>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 91.9 bits (218), Expect = 4e-19
Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 106 NILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 285
+I+ Q+ + N C DC +K P W S NLG+ CI C+G+HR +GVH+S+V+S+ LD+
Sbjct: 87 SIVKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQSITLDNI 146
Query: 286 TPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLE---SFIRAKYEQKKYIAKEWVP 456
+++ + +GN + EA L D ++P + ++ FI AKY + +Y K
Sbjct: 147 GTAELLLAKAIGNGGFNEIMEATL-DIDQKPTANSKMDEKKEFIHAKYIKHQYAQKSGES 205
Query: 457 PQ-LPKVNWDKEIDEEMDRQ 513
P+ + + W+ + E ++++
Sbjct: 206 PEKVLQTKWNTALHEAVEQE 225
>SB_17655| Best HMM Match : ArfGap (HMM E-Value=0.015)
Length = 401
Score = 85.8 bits (203), Expect = 3e-17
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 MTSKSEKDRAKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIH 231
M+++S++++ + Q+ Q ILV MLK+E NKYC DC AKG A L I +
Sbjct: 1 MSTRSQRNKDNK-QNANQAILVDMLKEEKNKYCADCAAKGTGLAYKFLAIQNSLMIHVYR 59
Query: 232 RNLGVHISKVKSVNLDS--WTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESF 405
+G ++ SV+L S W Q R + FRRPQ D ++E+F
Sbjct: 60 AKMG--FLELGSVHLHSLRWNSSQFRGTHLKSKIRQLGFVDGRANGDFRRPQTDSAMEAF 117
Query: 406 IRAKYEQKKYIAKEWVPPQ 462
IR KYEQKK+I K+ +PPQ
Sbjct: 118 IRKKYEQKKFIKKDGLPPQ 136
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 71.7 bits (168), Expect = 5e-13
Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +1
Query: 82 KQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKV 261
K+ ++ IL + + NK C DC +GP + + +G F+C C+GI R L +V
Sbjct: 6 KKQDEKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPP-QRV 64
Query: 262 KSVNLDSWTPEQVVSLQQMGNSRARAVY-----EANLPDSFRRPQNDMSLESFIRAKYEQ 426
KS+++ S+TP+++ LQ GN + + AN P+ R ++ ++ F+ KYE+
Sbjct: 65 KSISMTSFTPQEIEYLQGAGNEVCKKTWLGLWNSANNPEPESR--DEQKVKDFMIQKYER 122
Query: 427 KKYIAKEWVPPQLPKV 474
+++ ++PPQ V
Sbjct: 123 RRW----YIPPQQASV 134
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Frame = +1
Query: 232 RNLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR---PQNDMSLES 402
R+LGVH+SKV+S+ LD+W PE + + ++GNS ++YEA + ++ N E+
Sbjct: 299 RSLGVHVSKVRSLTLDAWEPEHLKLMSELGNSLINSIYEAKIAGDHKKINHLSNRSDREA 358
Query: 403 FIRAKYEQKKYIA 441
+I++KY ++++
Sbjct: 359 WIKSKYIYHRFVS 371
>SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)
Length = 618
Score = 37.9 bits (84), Expect = 0.007
Identities = 29/84 (34%), Positives = 41/84 (48%)
Frame = +1
Query: 196 GIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR 375
G+ L C I LGV +KVK NL+ PE+VV ++ SRAR A + DSF +
Sbjct: 31 GLALLKECTNIEGKLGVIYNKVKRSNLNFTAPEKVVFIR----SRAR----APVWDSFMK 82
Query: 376 PQNDMSLESFIRAKYEQKKYIAKE 447
S E ++ Y + K K+
Sbjct: 83 TVGMASYEGLVKCGYLEMKLPRKQ 106
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 EQVVSLQQMGNSRARAVYEANLPDSFR-RPQNDMSLE-SFIRAKYEQKKY 435
E VV + ++GN A + E +PD R RP D + FI AKYE KKY
Sbjct: 870 EIVVLMVKIGNENANKLLEFKIPDDDRIRPDADSAKRREFICAKYEYKKY 919
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 359 QTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
Q R+G H +TCP Y + RN S CP
Sbjct: 1375 QNRNGKHSSTCPSVLQYVDHIQNRNGKHSSTCP 1407
>SB_57352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +2
Query: 269 SISIRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTN--RRNTLR 442
SIS+ + S + A+P PC RT SG + W +P RR + R
Sbjct: 43 SISMGKTPKRKLSLSNCDNASPSPCFLRTMSNESGYCPDSPMWPSCESPTIELLRRPSFR 102
Query: 443 R-SGCPRSCPKS 475
R + P C +S
Sbjct: 103 RWNSSPAGCDES 114
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 283 WTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVPPQ 462
W VS++Q+ N + + + NL + +++M E+ + + KKY+ + PP+
Sbjct: 209 WDTRTDVSIEQIKNHKPHDISDDNLIPLRKPDRDEMFRENMKEYEEQAKKYVKPKKGPPK 268
Query: 463 L 465
L
Sbjct: 269 L 269
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Frame = +3
Query: 300 GVATANGKQPRPGRVRGELTRLVQASTERHVLGIVHTRQIRTEEIHCE------GVGAPA 461
G ANG+ PG + +L + A ++ VLG R + E+ CE V P
Sbjct: 325 GTCHANGRCVSPGEMNCQLLKTSSAGWDQGVLG-TPRRSMAMSEVTCEVGDAAGAVTVPT 383
Query: 462 AAQSQLG*RNRRRDGSTEKEKEVGDVIARTPTGP 563
+ S + E ++V ++I + P+ P
Sbjct: 384 SPVSHGSPVTSQPTAEDEDAEKVPEIILQPPSAP 417
>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Frame = +3
Query: 300 GVATANGKQPRPGRVRGELTRLVQASTERHVLGIVHTRQIRTEEIHCE------GVGAPA 461
G ANG+ PG + +L + A ++ VLG R + E+ CE V P
Sbjct: 1079 GTCHANGRCVSPGEMNCQLLKTSSAGWDQGVLG-TPRRSMAMSEVTCEVGDAAGAVTVPT 1137
Query: 462 AAQSQLG*RNRRRDGSTEKEKEVGDVIARTPTGP 563
+ S + E ++V ++I + P+ P
Sbjct: 1138 SPVSHGSPVTSQPTAEDEDAEKVPEIILQPPSAP 1171
>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
Length = 683
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 109 ILVQMLKDEDNKYCVDCDAKGPRWASWN--LGIFLCIRCAGIHRNLGVHISKV 261
I +Q+LKD N+Y D + G + N GIF+ IR G + G+ + K+
Sbjct: 171 IFLQLLKDSLNEYAYDAEIAGVTYNLDNTMYGIFMSIR--GYNHKQGILMEKI 221
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 409 RAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSSLGP 552
++K+E+K I K+ ++ + N +K+ D+E K+K S +S P
Sbjct: 586 KSKWEEKAAIEKQKYVQRMKEYNENKKNDKEESSPKKKSPSKKASKAP 633
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -2
Query: 364 SLVSSPRTRPGRGCFPFAVATPLAPESTNRD*HSSLWRCERPDSDGSQR-SGCTGICPNS 188
S ++S R GR C P + P +RD +W ++PD +R + C + P S
Sbjct: 382 SYITSRVERIGRHCIPEGTKLQILPYIVHRD--PEIW--DQPDEFRPERFAECQDVAPPS 437
Query: 187 MKPIV 173
P V
Sbjct: 438 YMPFV 442
>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1580
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 311 SKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLR 442
S+ AP P TR Q+ S HR T W S A + TLR
Sbjct: 860 SRLPPQAPQPGTRPVQQSDSPSHRWTNVWRLSLAVMASMLRTLR 903
>SB_21868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 359 QTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCPRSCPKSTG 481
Q + V R+ C W+ + +L SG P+ PK +G
Sbjct: 258 QYKDSVRRSQCSWSEIRGMESGATRSLGTSGDPKRGPKKSG 298
>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
Length = 478
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 445 EWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSSLGPL 555
EW+ P + K W +E DE++ + + ++ PL
Sbjct: 52 EWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPL 88
>SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 46 IEMTSKSEKDRAKQI--QDRCQ--NILVQMLKDEDNKYCVDCDA 165
++ ++S+ D A I + RC N ++ K E NKYC DC A
Sbjct: 14 LQTLARSQLDSAIDIKKEPRCLVLNAAERIRKVEGNKYCADCSA 57
>SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)
Length = 759
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 302 CRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNT 436
CRY+ + C + R GVH T+C R+Y NRRNT
Sbjct: 6 CRYTAYNRLTQICCYQNILPRRYGVH-TSCCVRRTY---DNRRNT 46
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +3
Query: 222 WDPSESGRSHLQSEECQSRFVDSGASGVATANGKQPRPGRVRGELTRLVQASTERHVLGI 401
WDPS G S+ C+ + + G S T + Q V+ E+ TE+ + GI
Sbjct: 440 WDPSCYG-----SKPCEKKHFEGGQS---TPSDSQ----NVQAEIRAGSSLCTEQEICGI 487
Query: 402 VHTRQIRTEEIHC 440
H +Q + HC
Sbjct: 488 THQQQNHLGDDHC 500
>SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 469
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 335
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_2790| Best HMM Match : HSBP1 (HMM E-Value=0.15)
Length = 263
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 351 ELTRLVQASTERHVLGIVHTRQIRTEEIHCEGV 449
E + + Q E + + +VHT R E HC GV
Sbjct: 47 EFSSVTQIQREDNKIKVVHTLSARPELSHCSGV 79
>SB_651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 278 IRGLRSKWCRYSKWETAAPGPCTRRTYQTRSGVHRTTCPWNRSYAPNTNRRNTLRRSGCP 457
+ GL++ +++ E GP ++ +T S V + Y N +RRN +R SG P
Sbjct: 69 VSGLKAS-LEFTQSEVERFGPINKKVKETDSEVVKVKDALE--YLENQSRRNNIRVSGIP 125
Query: 458 RS 463
S
Sbjct: 126 ES 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,323,361
Number of Sequences: 59808
Number of extensions: 445641
Number of successful extensions: 1540
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -