Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2019
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    28   0.29 
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    27   0.39 
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   3.6  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   6.3  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   8.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.4  

>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 27.9 bits (59), Expect = 0.29
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 415 KYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATS 540
           + E    I  + V  + P+ N  +EIDEE++ Q+++K++  S
Sbjct: 451 RIEPPAAIPSQEVRKRPPEKNPKEEIDEELEEQRQRKEAGLS 492


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 136 DNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVK 264
           + + CV+C A   P W     G +LC  C   H+  G++   +K
Sbjct: 116 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIK 159


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 14/68 (20%), Positives = 34/68 (50%)
 Frame = +1

Query: 358 PDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSAT 537
           P   ++PQ     +   R + +Q+++  + +VPPQL      ++  ++  RQ++K +   
Sbjct: 260 PQQQQQPQQKQ--QQLQRRQQQQQQHQGQRYVPPQL-----RQQAHQQQQRQQQKVRPRP 312

Query: 538 SSLGPLPA 561
             +  +P+
Sbjct: 313 DKIEVVPS 320


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/proton
            exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 362  TRSGVHRTTCPWNRSYAPNTNRRNTLRRSG 451
            +R+G H T  P   S+  N  R + L  SG
Sbjct: 1075 SRAGPHATAFPVTASHRRNNRRGSMLELSG 1104


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 397 PRTCRSVDA*TSLVSSPRTRPGRGCFPFAVATPLAPEST 281
           P T   + A TS    P T   + C P    T  AP ST
Sbjct: 323 PTTTHRLAARTSTPPDPETTSSQQCHPPVNDTLEAPNST 361


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 391  SLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEE 501
            +L   +R   EQK   A+E +    P+V  + E+D+E
Sbjct: 1199 NLADVLRKTKEQKIAQAQEAIDASAPEVEDEVELDKE 1235


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,854
Number of Sequences: 2352
Number of extensions: 14554
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)