Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2019
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 147 5e-36
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 128 4e-30
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 120 6e-28
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 116 1e-26
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 116 1e-26
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 116 1e-26
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 116 1e-26
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 111 5e-25
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 101 5e-22
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 100 2e-21
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 95 4e-20
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 95 4e-20
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 87 7e-18
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 87 1e-17
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 87 1e-17
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 87 1e-17
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 87 1e-17
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 83 2e-16
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 80 1e-15
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 80 1e-15
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 72 4e-13
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 72 4e-13
At4g25640.1 68417.m03692 MATE efflux family protein similar to r... 31 0.50
At3g51530.1 68416.m05643 F-box family protein various predicted ... 30 1.2
At2g07673.1 68415.m00898 hypothetical protein 30 1.5
At3g23840.1 68416.m02997 transferase family protein low similari... 29 2.0
At5g13460.1 68418.m01549 calmodulin-binding family protein low s... 29 2.7
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 4.7
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 28 6.2
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At4g30200.3 68417.m04295 expressed protein contains weak similar... 27 8.2
At4g30200.2 68417.m04294 expressed protein contains weak similar... 27 8.2
At4g30200.1 68417.m04293 expressed protein contains weak similar... 27 8.2
At3g28770.1 68416.m03591 expressed protein 27 8.2
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 27 8.2
At2g45590.1 68415.m05669 protein kinase family protein contains ... 27 8.2
At1g09600.1 68414.m01077 protein kinase family protein contains ... 27 8.2
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 147 bits (357), Expect = 5e-36
Identities = 65/136 (47%), Positives = 97/136 (71%)
Frame = +1
Query: 79 AKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISK 258
+K++ R + IL +LK +N+ C DC KGPRWAS NLGIF+C++C+GIHR+LGVHISK
Sbjct: 8 SKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISK 67
Query: 259 VKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYI 438
V+S LD+W PEQV +Q MGN +A + +EA LP ++ R + +E+FIRAKYE+K+++
Sbjct: 68 VRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWV 123
Query: 439 AKEWVPPQLPKVNWDK 486
++ P+V ++
Sbjct: 124 SRGEKARSPPRVEQER 139
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 128 bits (308), Expect = 4e-30
Identities = 55/114 (48%), Positives = 80/114 (70%)
Frame = +1
Query: 79 AKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISK 258
+K++ + IL +LK DN+ C DC +K PRWAS NLGIF+C++C+GIHR+LGVHIS+
Sbjct: 8 SKELNAKHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQ 67
Query: 259 VKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKY 420
V+S+ LD+W P+QV ++ GN++ +E+ LP F R +D +FIRAKY
Sbjct: 68 VRSITLDTWLPDQVAFMKSTGNAKGNEYWESELPQHFERSSSD----TFIRAKY 117
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 120 bits (290), Expect = 6e-28
Identities = 52/110 (47%), Positives = 79/110 (71%), Gaps = 4/110 (3%)
Frame = +1
Query: 121 MLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQV 300
+L DN+ C DC A P+WAS N+G+F+C++C G+HR+LG HISKV SV LD W+ E+V
Sbjct: 21 LLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEV 80
Query: 301 VSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLES---FIRAKYEQKKYI 438
S+ ++ GN+ A ++YEA LPD+ +P D++ + FIRAKYE ++++
Sbjct: 81 DSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFL 130
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 116 bits (280), Expect = 1e-26
Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 4/110 (3%)
Frame = +1
Query: 121 MLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQV 300
+L DN+ C DC A P+WAS N+G+F+C++C G+HR+LG HISKV SV LD W+ E+V
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEV 80
Query: 301 VSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLES---FIRAKYEQKKYI 438
S+ ++ GN+ A ++YEA +P+ +P D S + FIR+KYE ++++
Sbjct: 81 DSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFL 130
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 116 bits (280), Expect = 1e-26
Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 4/110 (3%)
Frame = +1
Query: 121 MLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQV 300
+L DN+ C DC A P+WAS N+G+F+C++C G+HR+LG HISKV SV LD W+ E+V
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEV 80
Query: 301 VSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLES---FIRAKYEQKKYI 438
S+ ++ GN+ A ++YEA +P+ +P D S + FIR+KYE ++++
Sbjct: 81 DSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFL 130
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 116 bits (280), Expect = 1e-26
Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 4/110 (3%)
Frame = +1
Query: 121 MLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQV 300
+L DN+ C DC A P+WAS N+G+F+C++C G+HR+LG HISKV SV LD W+ E+V
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEV 80
Query: 301 VSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLES---FIRAKYEQKKYI 438
S+ ++ GN+ A ++YEA +P+ +P D S + FIR+KYE ++++
Sbjct: 81 DSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFL 130
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 116 bits (280), Expect = 1e-26
Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 4/110 (3%)
Frame = +1
Query: 121 MLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQV 300
+L DN+ C DC A P+WAS N+G+F+C++C G+HR+LG HISKV SV LD W+ E+V
Sbjct: 21 LLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEV 80
Query: 301 VSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLES---FIRAKYEQKKYI 438
S+ ++ GN+ A ++YEA +P+ +P D S + FIR+KYE ++++
Sbjct: 81 DSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFL 130
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 111 bits (266), Expect = 5e-25
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 4/113 (3%)
Frame = +1
Query: 112 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTP 291
L ++LK NKYC DC + P+W S +LG+F+CI+C+G+HR+LGVHISKV SV LD WT
Sbjct: 50 LEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTD 109
Query: 292 EQVVSLQQM-GNSRARAVYEANLPDSFRRPQNDMSLE---SFIRAKYEQKKYI 438
+QV L GN+ +EA D ++P+ D + E FIR KYEQ +++
Sbjct: 110 DQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFM 162
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 101 bits (241), Expect = 5e-22
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = +1
Query: 103 QNILVQMLKDE-DNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD 279
+NI+ + LK + +NK C DC AK P WAS GIFLCI C+ HRNLGVHIS V+S NLD
Sbjct: 12 KNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLD 71
Query: 280 SWTPEQVVSLQQMGNSRARAVYE 348
SW+PEQ+ ++ GN+RA+ ++
Sbjct: 72 SWSPEQLRTMMFGGNNRAQVFFK 94
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +1
Query: 103 QNILVQMLKDE-DNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD 279
+N++ + LK + +NK C DC AK P WAS GIFLCI C+ +HR+LGVHIS V+S NLD
Sbjct: 9 KNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLD 68
Query: 280 SWTPEQVVSLQQMGNSRARAVYE 348
SW+PEQ+ ++ GN+RA+ ++
Sbjct: 69 SWSPEQLRTMMFGGNNRAQVFFK 91
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 95.1 bits (226), Expect = 4e-20
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +1
Query: 106 NILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 285
++ ++ DNK C DC+AK P WAS GIFLCI C+ +HR+LGVHIS V+S NLDSW
Sbjct: 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
Query: 286 TPEQVVSLQQMGNSRARAVYE 348
+ EQ+ + GN+RA+ ++
Sbjct: 71 SSEQLKMMIYGGNNRAQVFFK 91
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 95.1 bits (226), Expect = 4e-20
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +1
Query: 106 NILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 285
++ ++ DNK C DC+AK P WAS GIFLCI C+ +HR+LGVHIS V+S NLDSW
Sbjct: 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
Query: 286 TPEQVVSLQQMGNSRARAVYE 348
+ EQ+ + GN+RA+ ++
Sbjct: 71 SSEQLKMMIYGGNNRAQVFFK 91
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 87.4 bits (207), Expect = 7e-18
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 139 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD--SWTPEQVVSLQ 312
N+ C DC A P WAS NLG+ +CI C+GIHRNLGVHISKV+S+ LD W P + Q
Sbjct: 532 NERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLTLDVKVWEPSVLTLFQ 591
Query: 313 QMGNSRARAVYEANLPDSFR 372
+GN +V+E L R
Sbjct: 592 SLGNVYVNSVWEELLNSESR 611
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Frame = +1
Query: 139 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD--SWTPEQVVSLQ 312
N C DC A P WAS NLG+ +CI C+G+HRNLGVHISKV+S+ LD W P + Q
Sbjct: 454 NDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQ 513
Query: 313 QMGNSRARAVYE 348
+GN+ A V+E
Sbjct: 514 ALGNTFANTVWE 525
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 86.6 bits (205), Expect = 1e-17
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +1
Query: 136 DNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQ 315
+NK CVDC K P+WAS + GIF+C+ C+G HR LGVHIS V+SV +DSW+ Q+ ++
Sbjct: 15 ENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEA 74
Query: 316 MGNSR 330
GN R
Sbjct: 75 GGNER 79
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 86.6 bits (205), Expect = 1e-17
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +1
Query: 136 DNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQ 315
+NK CVDC K P+WAS + GIF+C+ C+G HR LGVHIS V+SV +DSW+ Q+ +
Sbjct: 15 ENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDA 74
Query: 316 MGNSR 330
GN R
Sbjct: 75 GGNER 79
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = +1
Query: 1 PFHFIVFQQLISG*IIEMTSKSEKDRAKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRW 180
P ++ + SG E + ++K+ Q + ++L + + N C +C+A P W
Sbjct: 433 PARYLDKKNTSSGPATENLTLNQKEDYNQRLNVGDDVLTILREIPGNNTCAECNAPDPDW 492
Query: 181 ASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD--SWTPEQVVSLQQMGNSRARAVYE 348
AS NLG+ +CI C+G+HRNLGVHISKV+S+ LD W P + + +GN +V+E
Sbjct: 493 ASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWE 550
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +1
Query: 139 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLD--SWTPEQVVSLQ 312
N C +C+A P WAS NLG+ LCI+C+G+HRNLGVHISKV+S++LD W P + +
Sbjct: 479 NNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPTILDLFR 538
Query: 313 QMGNSRARAVYEANL 357
+GN +++E L
Sbjct: 539 NLGNVYCNSLWEGLL 553
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 79.8 bits (188), Expect = 1e-15
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Frame = +1
Query: 79 AKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISK 258
+K+ ++R + I+ ++K N+ C++C++ GP++ F+C+ C+GIHR H +
Sbjct: 4 SKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-TH--R 60
Query: 259 VKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR-PQNDMS--LESFIRAKYEQK 429
VKSV++ +T ++V LQ GN RAR +Y N +R P+N + + FI+ Y QK
Sbjct: 61 VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120
Query: 430 KYI-AKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSS 543
KY A + P K + D E+M R+ S + S
Sbjct: 121 KYAGANDADKPS--KDSQDHVSSEDMTRRANSYHSYSQS 157
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 79.8 bits (188), Expect = 1e-15
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Frame = +1
Query: 79 AKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISK 258
+K+ ++R + I+ ++K N+ C++C++ GP++ F+C+ C+GIHR H +
Sbjct: 4 SKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-TH--R 60
Query: 259 VKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRR-PQNDMS--LESFIRAKYEQK 429
VKSV++ +T ++V LQ GN RAR +Y N +R P+N + + FI+ Y QK
Sbjct: 61 VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120
Query: 430 KYI-AKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSS 543
KY A + P K + D E+M R+ S + S
Sbjct: 121 KYAGANDADKPS--KDSQDHVSSEDMTRRANSYHSYSQS 157
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 71.7 bits (168), Expect = 4e-13
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Frame = +1
Query: 76 RAKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHIS 255
R K+ ++ + I+ +LK +NK C++C++ GP++ F+C C+GIHR H
Sbjct: 4 RVKE-DEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-TH-- 59
Query: 256 KVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYE 423
+VKS+++ +T ++V +L++ GN A+ +Y L D R+ D S L FIR Y
Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQHAKDIYFKGL-DQQRQSVPDGSNVERLRDFIRHVYV 118
Query: 424 QKKY 435
K+Y
Sbjct: 119 NKRY 122
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 71.7 bits (168), Expect = 4e-13
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Frame = +1
Query: 76 RAKQIQDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHIS 255
R K+ ++ + I+ +LK +NK C++C++ GP++ F+C C+GIHR H
Sbjct: 4 RVKE-DEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-TH-- 59
Query: 256 KVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYE 423
+VKS+++ +T ++V +L++ GN A+ +Y L D R+ D S L FIR Y
Sbjct: 60 RVKSISMAKFTSQEVTALKEGGNQHAKDIYFKGL-DQQRQSVPDGSNVERLRDFIRHVYV 118
Query: 424 QKKY 435
K+Y
Sbjct: 119 NKRY 122
>At4g25640.1 68417.m03692 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 488
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 463 LPKVNWDKEIDEEMDRQKRKKKSATSS 543
L K NW+KE++E M+R K+ S T+S
Sbjct: 457 LYKTNWNKEVEETMERMKKWGGSETTS 483
>At3g51530.1 68416.m05643 F-box family protein various predicted
proteins, Arabidopsis thaliana; contains Pfam profile
PF00646: F-box domain
Length = 455
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 409 RAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMD----RQKRKKKSATSSLGPLPAPRXC 573
+ K+ Q KY+ + NW +E ++E+ R R+ K AT S P+ A R C
Sbjct: 368 QGKWNQPKYVPECLETFMWRNCNWGREEEKEVATYILRNARQLKKATFSTDPIEAKRLC 426
>At2g07673.1 68415.m00898 hypothetical protein
Length = 106
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 235 NLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYE 348
NL + +K K +LDSW Q+ L+ GN +++A +
Sbjct: 11 NLYYYSNKTKKFSLDSWYLPQLHLLESKGNKKSKAAMD 48
>At3g23840.1 68416.m02997 transferase family protein low similarity
to hypersensitivity-related gene [Nicotiana tabacum]
GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase
[Clarkia concinna] GI:6166330; contains Pfam profile
PF02458: Transferase family
Length = 420
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 183 FMEFGHIPVHPLRWDPSESGRSHLQSEECQSRFVDS 290
F F IP R+ ESGR +L+ +C +RFV+S
Sbjct: 70 FSVFYQIPCIIGRFRRHESGRPYLKCNDCGTRFVES 105
>At5g13460.1 68418.m01549 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 443
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +1
Query: 391 SLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKKKSATSSLGPLPAPR 567
S ES+ + + KY EWV QL K KE+++ K K K T + L PR
Sbjct: 242 SAESYQKRSNTKWKYWLDEWVDTQLTK---SKELEDLDFSSKTKPKDETLNEKQLKTPR 297
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 406 IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEM 504
+R +Q K EW+ P + K W +E DE++
Sbjct: 38 VRKSAKQCKARWYEWLDPSIKKTEWTREEDEKL 70
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 242 AFTSPK*RVSISIRGLRSKWCRYSKW 319
AFT P +S IRGL SK CR W
Sbjct: 348 AFTRPL--ISYLIRGLHSKTCRKKSW 371
>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1092
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = -2
Query: 250 CERP-DSDGSQRSGCTGICPNSMKPI-----VDLLHHSQRSIC--CLHL*AFALIYSDND 95
C P D+D R C C S+K + + L+HS C C H +F+ +Y+DN
Sbjct: 71 CRNPGDADNPLRYPCA--CSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYADNA 128
Query: 94 P 92
P
Sbjct: 129 P 129
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 268 HSSLWRCERPDSDGSQRSGCTGICPNS 188
H S+W + P+ D ++S CT PN+
Sbjct: 385 HYSIWHRKVPEKDYPEKSTCTLFIPNT 411
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 268 HSSLWRCERPDSDGSQRSGCTGICPNS 188
H S+W + P+ D ++S CT PN+
Sbjct: 397 HYSIWHRKVPEKDYPEKSTCTLFIPNT 423
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 268 HSSLWRCERPDSDGSQRSGCTGICPNS 188
H S+W + P+ D ++S CT PN+
Sbjct: 368 HYSIWHRKVPEKDYPEKSTCTLFIPNT 394
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 346 EANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKRKK 525
E N + ++ D + ++ + +YE+KK KE + K + DK+ +E+ +++ K
Sbjct: 991 EENKDNKEKKESEDSASKNREKKEYEEKKSKTKEEAKKE-KKKSQDKKREEKDSEERKSK 1049
Query: 526 KSATSS 543
K S
Sbjct: 1050 KEKEES 1055
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 501 LFVYFFIPVDFGQLRGHPLLRNVFLLFVFG 412
L+ FF P++FG RG P N+F+L + G
Sbjct: 94 LYSSFFTPLEFGFFRGLP--ENLFILDIAG 121
>At2g45590.1 68415.m05669 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 683
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 466 PKVNWDKEIDEEMDRQKRKKK 528
P+ W +E EE+ R+KRKKK
Sbjct: 436 PREWWKEEFCEELTRKKRKKK 456
>At1g09600.1 68414.m01077 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 714
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 454 PPQLPKVNWDKEIDEEMDRQKRKKKSATSS 543
P LPK KEID + ++ K+K TSS
Sbjct: 456 PSSLPKYQPRKEIDVKAQEEEAKRKKDTSS 485
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,998,446
Number of Sequences: 28952
Number of extensions: 307581
Number of successful extensions: 1068
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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