Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2017
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   0.94 
UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;...    32   6.6  
UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacter...    32   6.6  
UniRef50_Q9CMX0 Cluster: Uncharacterized protein PM0682; n=1; Pa...    31   8.8  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.94
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 22  MKNAVNCAS*CELQDTFEHRHFERTLR 102
           MKN   C + CELQ+   HR FER LR
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 243

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 149 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 15
           C  P   +GPG  S    V +K  C+N SC+++Y+ + T F   P
Sbjct: 83  CEAPLVCNGPGKYSV---VPTKTDCNNDSCNNYYECEATWFLFVP 124


>UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 537

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 70  FEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 204
           F+HR  + ++R VE   GP+L EGR       H V+  A V R +
Sbjct: 212 FQHRRADGSIREVEVFAGPILLEGRSLLYSIVHDVSERARVEREL 256


>UniRef50_Q9CMX0 Cluster: Uncharacterized protein PM0682; n=1;
           Pasteurella multocida|Rep: Uncharacterized protein
           PM0682 - Pasteurella multocida
          Length = 102

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 321 LKMFYXYFKIFIITSNL 371
           L++FY YFKIFII SNL
Sbjct: 79  LRLFYFYFKIFIIFSNL 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,971,667
Number of Sequences: 1657284
Number of extensions: 6613299
Number of successful extensions: 14357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14356
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)