Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2017
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.3  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   3.1  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.1  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   9.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +2

Query: 59  CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 184
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 269 PKTTITNRVSLARLSDGSKNVLLXFQNFHNHVEP 370
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 61  QDTFEHRHFERTLRSVETHPGPLLSEG 141
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 321 LKMFYXYFKIFIITSNLSGARVMFSVRVASSRDMNFCRLGF 443
           LK  + ++ +F + SNL    +MF+   ++ +D  F +L F
Sbjct: 95  LKALHPFYPVFEVNSNLYYQLLMFT-NYSNPKDNGFSKLLF 134


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/42 (19%), Positives = 22/42 (52%)
 Frame = -3

Query: 427 KFISRELATRTLNITRAPERFDVIMKILKXQ*NIFRSVGETS 302
           KF+  E+    +++    +RFD + ++ +   +++R +   S
Sbjct: 803 KFLHPEVYPTLISVLSKNKRFDAVQRVFEHSKHLYRKISTKS 844


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,760
Number of Sequences: 5004
Number of extensions: 27084
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)