Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2017
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.25 
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   3.1  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   5.4  
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 204
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 204
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 71  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 157
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 104 PWRHIQDHSCLRAGCIKNI 160
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 204
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402


>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 269 PKTTITNRVSLARLSDGSKNVLLXFQNFHNHVEPLWRARYV*RAR 403
           P + + N      L DG  ++   +    N VEPLW   +V  A+
Sbjct: 17  PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHVEAAK 61


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 205 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 26
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 211

Query: 25  XXXREPSD 2
               EP D
Sbjct: 212 SSMHEPRD 219


>SB_3589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 64  DTFEHRHFER-TLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVDAFRVT 222
           D+  +  F R T  +V+T P    +  RLH+   +HC      ++R V   R T
Sbjct: 64  DSAHYTDFTRQTAHTVQTSPDRQRTLYRLHQTDSAHCTDFTKQIVRTVQTTRQT 117


>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 205 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 26
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 65  QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 120

Query: 25  XXXREPSD 2
               EP D
Sbjct: 121 SSMHEPRD 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,914
Number of Sequences: 59808
Number of extensions: 225251
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)