Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2017
         (450 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   0.93 
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        22   8.7  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        22   8.7  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        22   8.7  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        22   8.7  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    22   8.7  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 122  PGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPR 12
            P    T  NVR+  + + V+ S+  + QLTA   DPR
Sbjct: 1230 PNISLTHSNVRNSYQLTRVAPSNRTNNQLTAQHQDPR 1266


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 158 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSH 51
           C  CS     SG  C  T      K   ++  CS H
Sbjct: 4   CGTCSCFDSWSGDNCECTTDTTGCKAPSNDAVCSGH 39


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 158 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSH 51
           C  CS     SG  C  T      K   ++  CS H
Sbjct: 4   CGTCSCFDSWSGDNCECTTDTTGCKAPSNDAVCSGH 39


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 158 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSH 51
           C  CS     SG  C  T      K   ++  CS H
Sbjct: 4   CGTCSCFDSWSGDNCECTTDTTGCKAPSNDAVCSGH 39


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 158 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSH 51
           C  CS     SG  C  T      K   ++  CS H
Sbjct: 4   CGTCSCFDSWSGDNCECTTDTTGCKAPSNDAVCSGH 39


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 158 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSH 51
           C  CS     SG  C  T      K   ++  CS H
Sbjct: 580 CGTCSCFDSWSGDNCECTTDTTGCKAPSNDAVCSGH 615


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,259
Number of Sequences: 2352
Number of extensions: 7467
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)