Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2017
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 107 TDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 15
           TDR +R+K     V C     A + + + DP
Sbjct: 74  TDRVIRAKLGKVGVHCMKTTQAVVVSLYEDP 104


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 214 RVTRSYSSLRVVLFN*NLTEDYD 282
           RVTR YSS   VL + + T+ +D
Sbjct: 241 RVTRCYSSDSAVLSDEDQTKGWD 263


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 401 AHAKHNARAREVRRDYENFEIXIKHF 324
           AH   N+RA     DY      +K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 341 FQNFHNHVEPLWR 379
           F N HNH++ +++
Sbjct: 52  FDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 341 FQNFHNHVEPLWR 379
           F N HNH++ +++
Sbjct: 35  FDNVHNHIQNIFK 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   GSRVDEERS*LRV 47
           GSR DEER  LR+
Sbjct: 295 GSRFDEERLTLRI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,555
Number of Sequences: 438
Number of extensions: 1713
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)