Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1340
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.27 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.27 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.27 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.27 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.27 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   4.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   4.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 217 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 217 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 217 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 217 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 217 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 258


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 371 LNLTI*LMFCYYYNLLCCYVKSIIKKIMKLIQ 276
           +NL + L +C+Y N+L    + + + +  L+Q
Sbjct: 190 INLLMELQYCHYLNILRVRYQLLNEYLETLVQ 221


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 371 LNLTI*LMFCYYYNLLCCYVKSIIKKIMKLIQ 276
           +NL + L +C+Y N+L    + + + +  L+Q
Sbjct: 190 INLLMELQYCHYLNILRVRYQLLNEYLETLVQ 221


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 347 FCYYYNLLCCYVKSIIKKIMKLIQTYAL*I*QITLLIVYY 228
           F Y + L CC        ++ L+  Y      I LL +YY
Sbjct: 261 FYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYY 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,983
Number of Sequences: 336
Number of extensions: 2807
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)