Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1340
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.90 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   8.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.4  

>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 361 VRFNL*FFYIFHYCLIQIITQVKRYLYH 444
           +R NL   +++HY  I + T  + Y+YH
Sbjct: 28  IRINLQHMHLYHYEHIHLFTSSQSYMYH 55


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 309 IYYKENHEINSNLRSINLTNNFTDSL-LLKRMNTKCC 202
           +Y K    +N+N+ +  L  N+T  L LL R+   CC
Sbjct: 782 LYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACC 818


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 388 IFHYCLIQIITQVKRYLYHTIKFILI*LNRSSINSTLFDI 507
           +FH     I    K +L + I ++L   NRS +NS L ++
Sbjct: 229 LFHLYSFGIPGNTKEFLAYRILYMLFTKNRSEMNSLLANL 268


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 297 ENHEINSNLRSINLTNNFTDSLLL--KRMNTKCCCT 196
           E+ E+N NL+S    +NF + LL+  K      CCT
Sbjct: 811 ESSELNFNLKSAVKNDNFPEFLLVQWKLYLIVACCT 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,653
Number of Sequences: 5004
Number of extensions: 44796
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)