Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1340
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.32 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.32 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.32 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.42 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.9  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 241


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 268 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 309


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 268 NLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLN 309


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 NVVVPKILSKSL*NFVNTVKNSNKIRIYLGITILYSIINFCN 84
           N++VP +L  S+     T+   +  ++ LG+TIL S+  F N
Sbjct: 237 NLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLN 278


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 566 HFNIH*NTYNISINSYFE*LISNNVEFID 480
           HF +  N Y  SI S FE L  ++ +F+D
Sbjct: 6   HFCLRWNNYQSSITSAFENL-RDDEDFVD 33


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 566 HFNIH*NTYNISINSYFE*LISNNVEFID 480
           HF +  N Y  SI S FE L  ++ +F+D
Sbjct: 6   HFCLRWNNYQSSITSAFENL-RDDEDFVD 33


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 66  HGISSVITEIYNRIQNSYT*VY-SNFIRIFDSIHEI 170
           H I S ++  YN   N+Y  +Y +N+ +++ +I+ I
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,173
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)