Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4D1F4 Cluster: Putative uncharacterized protein; n=2; ...    34   1.7  
UniRef50_Q9NKP1 Cluster: Protein kinase, putative; n=2; Leishman...    33   2.9  
UniRef50_Q2JDW8 Cluster: Single-stranded DNA-binding protein; n=...    33   5.1  
UniRef50_Q9VYC4 Cluster: CG15753-PA; n=2; Sophophora|Rep: CG1575...    32   6.8  
UniRef50_A6FNU4 Cluster: Sec-independent protein translocase Tat...    32   8.9  

>UniRef50_Q4D1F4 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1134

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 46  RRTLPTNERGSGGGVVAQEPTTQVPLTASNKHHRARDHV 162
           RR+LP +ERGS  G V   P+T + +  S+ HH   +++
Sbjct: 766 RRSLPCSERGSRSGSVLVRPSTHLLIGLSDGHHELFEYL 804


>UniRef50_Q9NKP1 Cluster: Protein kinase, putative; n=2;
            Leishmania|Rep: Protein kinase, putative - Leishmania
            major
          Length = 3112

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +1

Query: 28   ANLSCPRRTLPTNERGSGGGVVAQEP 105
            A LSCP   LP N  GSGGG V   P
Sbjct: 1694 ATLSCPNTQLPANGSGSGGGSVVLVP 1719


>UniRef50_Q2JDW8 Cluster: Single-stranded DNA-binding protein; n=2;
           Frankia|Rep: Single-stranded DNA-binding protein -
           Frankia sp. (strain CcI3)
          Length = 225

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -3

Query: 167 KLTWSRAR*CLLLAVNGT*VVGSCATTPPPEPRSLVGRVRRGQERLAL 24
           +LTW  AR   L    G+ VV + AT  P +P +LVG    G E  AL
Sbjct: 108 ELTWHAARSERLARRPGSAVVAAAATDVPSDPSALVGSALVGSEHGAL 155


>UniRef50_Q9VYC4 Cluster: CG15753-PA; n=2; Sophophora|Rep:
           CG15753-PA - Drosophila melanogaster (Fruit fly)
          Length = 458

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 43  PRRTLPTNERGSGG-GVVAQEPTTQVPLTA-SNKHHRARDHVNFFF 174
           PRR +   +RG G  GV +  P T  P  A +  HHR    + F F
Sbjct: 403 PRRRVAIRQRGGGAAGVFSLRPPTSTPTPAPTTTHHRPHIRIRFAF 448


>UniRef50_A6FNU4 Cluster: Sec-independent protein translocase TatC,
           putative; n=1; Roseobacter sp. AzwK-3b|Rep:
           Sec-independent protein translocase TatC, putative -
           Roseobacter sp. AzwK-3b
          Length = 354

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 73  GSGGGVVAQEPTTQVPLTASNKHHRARDHVNFFFSFRYAFGKCF 204
           GSGG  +  +P T  PL+   +   A++++N    F  AFG CF
Sbjct: 152 GSGGEALPGDPQTAAPLSVVFQGS-AQEYLNLTIKFIVAFGLCF 194


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,934,094
Number of Sequences: 1657284
Number of extensions: 7953836
Number of successful extensions: 21884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21877
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)