Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 430 GFLDYIKNDKDIE 392
           GFL Y K D+D++
Sbjct: 84  GFLTYTKADRDVD 96


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 60  RQGAPRAGEVGFDSKG 13
           + G P   E+GFD++G
Sbjct: 203 KYGVPTLEELGFDTEG 218


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 340 ILKPHFNIYGRVHKM 296
           IL P+ N YG  H M
Sbjct: 351 ILSPNRNYYGDFHNM 365


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/34 (23%), Positives = 13/34 (38%)
 Frame = +1

Query: 64  NERGSGGGVVAQEPTTQVPLTASNKHHRARDHVN 165
           N++ S      Q+          N HH A  H++
Sbjct: 298 NKKNSQRQAAQQQNNNNAATNNQNHHHHAGHHIH 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,964
Number of Sequences: 336
Number of extensions: 2234
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)