Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   6.7  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   8.9  

>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 14  PFESKPTSPARGAPCRPTNEA 76
           P  S PT+PA   P  PT E+
Sbjct: 233 PASSTPTAPAEKEPTAPTTES 253


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 442 HYNNGFLDYIKNDKDIENLHLNRP*EP 362
           +++N     +KN  DI+ LH+NR  +P
Sbjct: 14  YFSNKKKPTVKNTSDIDLLHINRGRQP 40


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 139 HHRARDHVNFFFSFRYA 189
           H+ A+D VN FF+ R+A
Sbjct: 174 HYTAKDMVNNFFTLRFA 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,838
Number of Sequences: 5004
Number of extensions: 33796
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)