Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0827 + 6244025-6244294                                           28   3.9  
12_02_0783 + 23125786-23126037,23126867-23127784                       27   6.8  
12_02_0984 - 25038082-25038264,25038514-25038588,25038693-250387...    27   8.9  
10_01_0073 - 955746-955758,955811-956832                               27   8.9  
10_01_0072 - 918323-918335,918388-919409                               27   8.9  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           27   8.9  
02_05_1277 - 35408097-35409080                                         27   8.9  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    27   8.9  

>06_01_0827 + 6244025-6244294
          Length = 89

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 182 RKEKKKLTWSRAR*CLLLAVNGT*VVGSCATTPPPEP 72
           R +++ + W++A   + +A NG     S +TTPPP P
Sbjct: 51  RMKRELVAWAKAVASMAMAANGG-AGSSPSTTPPPSP 86


>12_02_0783 + 23125786-23126037,23126867-23127784
          Length = 389

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 137 LLLAVNGT*--VVGSCATTPPPEPRSLVGRVRRGQ 39
           LLLA  G    + GS   TP P PR   G  RRGQ
Sbjct: 157 LLLAATGQSWRLRGSPPPTPTPPPRRATGERRRGQ 191


>12_02_0984 -
          25038082-25038264,25038514-25038588,25038693-25038725,
          25038753-25038869,25039322-25039402,25040389-25040700
          Length = 266

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 86 PPPEPRSLVGRVRRGQERLALTQK 15
          P P P  LV R R G++R ALT +
Sbjct: 13 PAPVPLPLVLRFRNGEDRFALTDQ 36


>10_01_0073 - 955746-955758,955811-956832
          Length = 344

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 29  PTSPARGAP-CRPTNEALAEAWSHKNRQLRFH*PQ 130
           P  PA  AP   P N A ++ W H  +Q + H P+
Sbjct: 79  PPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPR 113


>10_01_0072 - 918323-918335,918388-919409
          Length = 344

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 29  PTSPARGAP-CRPTNEALAEAWSHKNRQLRFH*PQ 130
           P  PA  AP   P N A ++ W H  +Q + H P+
Sbjct: 79  PPPPATEAPPSMPMNFARSDMWMHPQQQQQHHHPR 113


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 40  CPRRTLPTNERGSGGGVVAQEPTTQVPLTASNKHH 144
           CP     T   G+GG +    P++ +P    + HH
Sbjct: 194 CPLFMFDTTTTGAGGAISPPPPSSLIPTHLHHHHH 228


>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 227 RKCTKLLQKHLPNA*RKEKKKLTWSRAR*CLLLAVNGT*VVGSCATTPPPEP 72
           RK TK  + H   A   E           CL+L   G  VV S  +TP P P
Sbjct: 13  RKRTKRPRHHAAPASSSESTTTEEEDMAHCLILLAQGAAVVDSKPSTPAPPP 64


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 86  PPPEP--RSLVGRVRRGQERLALTQKVL 9
           PPP P  RS+VG  RRG  R  L + +L
Sbjct: 27  PPPSPLLRSVVGPTRRGSARSRLARFLL 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,969
Number of Sequences: 37544
Number of extensions: 219339
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)