Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86978-1|BAA13214.1| 2013|Homo sapiens KIAA0225 protein.               29   9.7  
BC146784-1|AAI46785.1| 2012|Homo sapiens nucleoporin 205kDa prot...    29   9.7  
BC044255-1|AAH44255.1|  832|Homo sapiens NUP205 protein protein.       29   9.7  

>D86978-1|BAA13214.1| 2013|Homo sapiens KIAA0225 protein.
          Length = 2013

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 110  VVGSCATTPPPEPRSLVGRVRRGQERLALTQKVL 9
            ++ SC T+PPPE   LVG    G   L +  K L
Sbjct: 1371 MLDSCFTSPPPEENPLVGFASIGDSSLYIILKKL 1404


>BC146784-1|AAI46785.1| 2012|Homo sapiens nucleoporin 205kDa protein.
          Length = 2012

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 110  VVGSCATTPPPEPRSLVGRVRRGQERLALTQKVL 9
            ++ SC T+PPPE   LVG    G   L +  K L
Sbjct: 1370 MLDSCFTSPPPEENPLVGFASIGDSSLYIILKKL 1403


>BC044255-1|AAH44255.1|  832|Homo sapiens NUP205 protein protein.
          Length = 832

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 110 VVGSCATTPPPEPRSLVGRVRRGQERLALTQKVL 9
           ++ SC T+PPPE   LVG    G   L +  K L
Sbjct: 190 MLDSCFTSPPPEENPLVGFASIGDSSLYIILKKL 223


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,068,420
Number of Sequences: 237096
Number of extensions: 1210793
Number of successful extensions: 2640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)