Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    29   2.6  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        29   2.6  
U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    27   6.0  
U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 88  VVAQEPTTQVPLTASNKHHRARDHVNFFFSFRYAFGKCFCNS 213
           VV + PTT  P T   +    RD    F  F   F +C C S
Sbjct: 199 VVTEPPTTPAPTTKPARRRGKRDLSGAF--FEPGFARCLCGS 238


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 88  VVAQEPTTQVPLTASNKHHRARDHVNFFFSFRYAFGKCFCNS 213
           VV + PTT  P T   +    RD    F  F   F +C C S
Sbjct: 199 VVTEPPTTPAPTTKPARRRGKRDLSGAF--FEPGFARCLCGS 238


>U50300-6|AAC48109.1|  642|Caenorhabditis elegans Hypothetical
           protein R03H4.1 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = -1

Query: 457 IARYPHYN----NGFLDY-IKNDKDIENLHLNR 374
           +  +P YN    N FL Y I+N  ++E+LHLNR
Sbjct: 531 LGSHPLYNINHLNTFLHYLIQNSDELESLHLNR 563


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 230 LRKCTKLLQKHLPNA*RKEKKKLTWSR 150
           LR C + ++KHL +   K+K +L W R
Sbjct: 370 LRFCIEKVRKHLEDLDSKDKNELIWQR 396


>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 23  SKPTSPARGAPCRPTNEALAEAWSHKNRQLRFH*PQATNIIE 148
           SK + PAR    R  N   A AW   + ++R   P   NII+
Sbjct: 115 SKESRPARHQIARYLNLTSALAWRDVSTKIRLRFPSLRNIID 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,693
Number of Sequences: 27780
Number of extensions: 198122
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)