Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 NFFFSFRYAFGKCFC 207
           +F F+F+    KCFC
Sbjct: 68  DFRFAFKSIICKCFC 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 NFFFSFRYAFGKCFC 207
           +F F+F+    KCFC
Sbjct: 516 DFRFAFKSIICKCFC 530


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 110 VVGSCATTPPPE 75
           ++GS  T+PPPE
Sbjct: 408 LIGSRRTSPPPE 419



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 95  ATTPPPEPRSLVGRVRRGQERLALTQKVL 9
           ATTPPP+   +  +   G E     +K L
Sbjct: 686 ATTPPPQVDEVDDKELSGAEEEKEVEKAL 714


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 54  GAPRAGEVGFDSKG 13
           G P   E+GFD++G
Sbjct: 209 GVPTLEELGFDTEG 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,905
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)