Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1339
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43880.1 68418.m05366 expressed protein                             28   4.3  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    27   5.7  
At3g11240.1 68416.m01367 arginine-tRNA-protein transferase, puta...    27   5.7  
At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransfera...    27   7.5  

>At5g43880.1 68418.m05366 expressed protein
          Length = 836

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +2

Query: 5   YLGPFESKPTSPARGAP-----CRPTNEALAEAWS 94
           Y  PF S P S A G+P     CR   + L+E W+
Sbjct: 357 YDSPFSSSPFSRASGSPESSSVCREAKKRLSERWA 391


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 89  TPPPEPRSLVGRVRRGQERLALTQKVL 9
           +PPP+P S+  R+  G E  A+T+  L
Sbjct: 88  SPPPQPPSIFSRIVSGDEDRAVTEVYL 114


>At3g11240.1 68416.m01367 arginine-tRNA-protein transferase,
           putative / arginyltransferase, putative /
           arginyl-tRNA-protein transferase, putative similar to
           SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8) (R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1) {Arabidopsis
           thaliana}; contains Pfam profiles PF04377:
           Arginine-tRNA-protein transferase C terminus, PF04376:
           Arginine-tRNA-protein transferase N terminus
          Length = 605

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 278 NLTHKSTIYYYY*KYALRKCTKLLQK 201
           N  H ST+ YYY  Y +  C K+  K
Sbjct: 432 NQAHCSTLEYYYLGYYIHSCNKMRYK 457


>At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransferase
           A / FucTA / core alpha-(1,3)-fucosyltransferase (FUT11)
           identical to Glycoprotein 3-alpha-L-fucosyltransferase A
           (Core alpha-(1,3)-fucosyltransferase)(Fuc-T C3) (FucTA)
           (FucT1) (AtFUT11)(SP:Q9LJK1) from [Arabidopsis
           thaliana]; contains Pfam profile PF00852: Fucosyl
           transferase; identical to cDNA
           alpha1,3-fucosyltransferase (FucTA) GI:13992482
          Length = 501

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 222 LP*CVFLIIIIYRRFMCKINN 284
           LP CV L++II   F+C+++N
Sbjct: 44  LPICVALVVIIEIGFLCRLDN 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,325,402
Number of Sequences: 28952
Number of extensions: 173847
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)