Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1336
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581...    29   2.6  
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397...    29   4.6  
10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706     28   6.1  
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506...    28   8.0  

>08_02_0531 +
           18256597-18256836,18257637-18257735,18258038-18258184,
           18258295-18258427,18258521-18258585,18258792-18258962,
           18259095-18259199,18259495-18259602,18259792-18260088,
           18260191-18260256,18260477-18260679,18261178-18261232,
           18261318-18261503,18261701-18261985
          Length = 719

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 398 DSTKQPASSKANGNSHSRENECVPSLKFSFAHC 496
           +  KQ  S K     H R NE +  LK+  A+C
Sbjct: 395 EMAKQEESKKIISEEHQRSNEQITDLKYKLANC 427


>01_01_0542 +
           3975500-3975546,3976273-3976370,3976694-3976830,
           3977518-3977871,3977953-3978041,3978502-3978589,
           3978659-3978734,3978858-3978907,3979032-3979340,
           3979803-3979982,3980086-3980325,3980471-3980582,
           3980931-3981040,3981162-3981311,3981777-3981932,
           3982289-3982405,3982759-3982839,3983338-3983478
          Length = 844

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 353 NIYRNCLKKTRKHNNDSTKQPASSKANGNSHSRENECVPS 472
           N +R   + ++  N    KQP SS    NS    N  VPS
Sbjct: 469 NSFRGSEQVSKNQNGRKRKQPISSSGPANSSGTGNTAVPS 508


>10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706
          Length = 169

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 414 PPPRKPMATRTPVKTNVYRP*SLALLIANVRRLFLCP 524
           P PRKP A   P +  ++    L+L +  + RLF  P
Sbjct: 63  PAPRKPRAPAAPCRKRLFEVEVLSLRLEELERLFWRP 99


>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
            15652168-15652254,15652470-15652538,15652699-15652845,
            15652923-15653003,15653122-15653223,15653392-15653429,
            15653590-15653692,15653766-15653888,15654872-15654951,
            15655356-15655504,15657794-15658010,15658379-15658448,
            15659167-15659313,15659430-15659486,15663270-15663436,
            15663479-15663569,15664044-15665081,15665580-15665695,
            15666104-15667039,15667108-15667170,15667416-15667970,
            15668293-15668305
          Length = 1570

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 293  HYVLWSSLGHHKYYRHAYFYFS 228
            HY  + ++GH    RH Y+YF+
Sbjct: 1154 HYAGYITVGHQPLKRHMYYYFA 1175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,778,196
Number of Sequences: 37544
Number of extensions: 284239
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)