Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1336
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_42802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6)             28   8.2  
SB_55815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            28   8.2  
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)                28   8.2  

>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 494 NEQS*TLRTVHIRFHGSASCHW 429
           N +S   R+VH+ FHG A  +W
Sbjct: 47  NTESLKFRSVHVEFHGEARTNW 68


>SB_42802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = -3

Query: 301 VINIMYCGAHLGTISTTVMPISTSLSSSNYTF 206
           V N ++ G++LGT++  V+P STS+  SN++F
Sbjct: 6   VDNQIFGGSNLGTVA--VIPASTSVPLSNFSF 35


>SB_22641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 356 IYRNCLKKTRKHNNDSTKQPASSKANGNSHSRENECVPSL 475
           I+    K+T  +N ++TKQ  ++  N N+H+  N  + S+
Sbjct: 157 IHNQTTKQTTPNNTNNTKQHQTTPNNNNNHTTPNTSLISI 196


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +2

Query: 374 KKTRKHNNDSTKQPASSKANGNSHSREN---ECVPS 472
           K T KH  D  ++PAS K    SH + +   E  PS
Sbjct: 67  KHTPKHGTDDDEEPASRKRKKKSHKKRDSTPEAAPS 102


>SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 386 FSFSLSNFGRYSVLKVSSQAILVVRLN-LRY*HYVLWSSLGHHKYYRHAYFYFSI 225
           F F++       V+ + S  +L+V LN   Y  + +W SLG   Y  + Y++ S+
Sbjct: 502 FPFTVPCVPLIPVMTIFSNTLLMVSLNHWTYVRFAVWMSLGALIYMFYGYWHSSL 556


>SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 569 LQKLSGNNLHRAVSQRAKKQTSNIRNEQS*TLRTVHIRFHGSASCHW 429
           L K S ++LH A  +R  K+TS + ++    L+ + +  H +A  +W
Sbjct: 112 LDKQSDSSLHAAKQERKDKETSPLVDDHK-LLKIMEVGIHKNALRNW 157


>SB_55815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 371 LKKTRKHNNDSTKQPASSKANGNSHS 448
           L+   +H+ D+T  PASS+  G +HS
Sbjct: 27  LQAAGRHSADNTLSPASSERTGETHS 52


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 500 IRNEQS*TLRTVHIRFHGSASCHW 429
           + +++S   R+VH+ FHG A  +W
Sbjct: 30  VYSKESLKFRSVHVEFHGEARTNW 53


>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
          Length = 426

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -2

Query: 593 RRGNLINNLQKLSGNNLHRAVSQRAKKQTSNIRNEQS*TLRTVHIRFHGSASCHWLSRR 417
           R+ N  NN +K  GNN +    Q   K   N R +      T     + S SCHW  ++
Sbjct: 204 RQPNRRNNQRKGRGNNGNNGGQQ---KTNGNKRRQTQDRRPTTPGSHNSSTSCHWCGKK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,722
Number of Sequences: 59808
Number of extensions: 349677
Number of successful extensions: 1053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)