Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1336
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17920-1|CAA76940.1| 4116|Drosophila melanogaster CALO protein p...    29   7.9  
AF096897-1|AAD20450.1| 5322|Drosophila melanogaster pushover pro...    29   7.9  
AE014134-1390|AAF52598.1| 5322|Drosophila melanogaster CG14472-P...    29   7.9  

>Y17920-1|CAA76940.1| 4116|Drosophila melanogaster CALO protein
            protein.
          Length = 4116

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 548  CSRKVSEGCLLNYRAVRVRFQCHAQCSWSKRRSVN 652
            CS K+ EG  ++YRA     + H   +WSKR   N
Sbjct: 2952 CSMKMFEGNTVDYRAWLNSDRNHEYAAWSKRMPSN 2986


>AF096897-1|AAD20450.1| 5322|Drosophila melanogaster pushover protein.
          Length = 5322

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 548  CSRKVSEGCLLNYRAVRVRFQCHAQCSWSKRRSVN 652
            CS K+ EG  ++YRA     + H   +WSKR   N
Sbjct: 4158 CSMKMFEGNTVDYRAWLNSDRNHEYAAWSKRMPSN 4192


>AE014134-1390|AAF52598.1| 5322|Drosophila melanogaster CG14472-PA
            protein.
          Length = 5322

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 548  CSRKVSEGCLLNYRAVRVRFQCHAQCSWSKRRSVN 652
            CS K+ EG  ++YRA     + H   +WSKR   N
Sbjct: 4158 CSMKMFEGNTVDYRAWLNSDRNHEYAAWSKRMPSN 4192


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,986,551
Number of Sequences: 53049
Number of extensions: 507576
Number of successful extensions: 1648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)