Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1336
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    31   0.59 
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    29   2.4  
U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical p...    29   3.1  
U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine rece...    27   9.6  

>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -2

Query: 611 TEIVLGRRGNLINNLQKLS---GNNLHRAVSQRAK-KQTSNIRNEQ 486
           TEI L  +GNL++++ ++     NNL + V +R K  + +N+R E+
Sbjct: 767 TEIALKTKGNLVDSMMRMMEEYANNLEKLVGERTKLAEEANLRAER 812


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 359 YRNCLKKTRKHNNDSTKQ---PASSKANGNSHSREN 457
           Y NCLK      N+++ Q   P+S  +N +S SR N
Sbjct: 64  YTNCLKAGMSRGNEASSQRSIPSSGSSNSSSTSRSN 99


>U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical
           protein F45E4.11 protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 392 NNDSTKQPASSKANGNSHSRENECVPSLKFSFAHCEC*TFVSL 520
           NN ST   A  ++    HS  +   PS++   A   C  F++L
Sbjct: 39  NNGSTSMAADDQSQDEEHSAHSVLFPSMRLMLAAMLCCCFITL 81


>U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine
           receptor, class x protein2 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 535 PSRKGQRNKRLTFAMSKAKL*GRYTFVFTGVRV---AIGFRG 419
           P R+ ++N+ +T+AM    +   YTF +   RV   AIG RG
Sbjct: 218 PGRRSRKNREVTYAMQFCFISMFYTFSWITFRVFPIAIGDRG 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,035
Number of Sequences: 27780
Number of extensions: 268550
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)