Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1336
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08500.1 68416.m00985 myb family transcription factor (MYB83)...    28   5.1  
At5g56850.2 68418.m07093 expressed protein                             27   8.9  
At5g56850.1 68418.m07094 expressed protein                             27   8.9  
At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase fa...    27   8.9  

>At3g08500.1 68416.m00985 myb family transcription factor (MYB83)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 343

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 350 RNIYRNCLKKTRKHNNDSTKQPASSKANGNSHS 448
           +N + + LKK  K+N+++     SS  N NS+S
Sbjct: 123 KNFWNSTLKKRLKNNSNNNTSSGSSPNNSNSNS 155


>At5g56850.2 68418.m07093 expressed protein
          Length = 413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 623 IERDTEIVLGRRGNLINNLQKLSGNNLHRAVSQRAKKQTSNIRNEQS 483
           I+  T   +G RG+   N+ K++ NN    + +  K+++ N    +S
Sbjct: 341 IDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESES 387


>At5g56850.1 68418.m07094 expressed protein
          Length = 551

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -2

Query: 623 IERDTEIVLGRRGNLINNLQKLSGNNLHRAVSQRAKKQTSNIRNEQS 483
           I+  T   +G RG+   N+ K++ NN    + +  K+++ N    +S
Sbjct: 479 IDESTRENIGERGSRCINIAKINSNNKWTNIERSKKQKSENSAESES 525


>At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 417

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 521 PFARRHDVNCSRKVSEGCLLNYRAVRVRFQCH 616
           P+ R   V+C      GCL N  +V VRFQ H
Sbjct: 175 PYIRYPSVSCVGCGIMGCLGNKGSVSVRFQLH 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,955
Number of Sequences: 28952
Number of extensions: 241184
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)