Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1335
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 1.2
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 26 1.6
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 26 2.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 2.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.7
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 25 4.9
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 24 6.5
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 24 8.6
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 24 8.6
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 24 8.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 24 8.6
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 1.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -1
Query: 354 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 199
S + IP+ P T + + KNS A + +L + +D S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 365 PSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 186
PS+P + +P+S +PP R +S+ S L + L +FP P ++ Y D
Sbjct: 162 PSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYTQD 218
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 359 RPAEIMPLSQRTQKPRYSP 303
+PA +PLS+R+ P Y+P
Sbjct: 45 KPANSIPLSKRSTSPSYAP 63
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 2.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 320 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 186
K Y+P I GL++ TLS +LM L+ P ++ + G D
Sbjct: 50 KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 3.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 341 PLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAF 225
PLSQ+ P + P LS+ L FFL+ L+F
Sbjct: 91 PLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFFLSF 129
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 242 SGKIEPSPIRLKLKAPEFLTEGNIVVFG 325
SG+I P L L P + EG+ ++ G
Sbjct: 201 SGRIRRGPAPLNLAIPAYTFEGSKIIIG 228
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 330 TNPKTTIFPSVKNSGAFNFNL 268
T+PK I +V+N G F ++L
Sbjct: 181 TSPKGIIMSAVRNHGCFQYSL 201
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 58 NVMDVATDDNLQYQFFPVSSGSVQFK 135
++ + ATDDN Q P+SS + F+
Sbjct: 379 SLFEYATDDNYGLQISPLSSVNPDFR 404
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +2
Query: 83 TTFNTNSSLFQVDQFSSKSEQRMMPTSRSRQARKNRI 193
+ N N + QF++ S R +++R+ +KN +
Sbjct: 337 SNLNANFARLGFGQFAAASNARAKAAAKARELKKNEV 373
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 356 PAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMTLLAF 225
P+E+MPL + + P +PG +++ + L FF+ +L+ F
Sbjct: 229 PSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSSLIPF 277
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 332 QRTQKPRYSPPLRIPGLSI 276
Q T + + PPL PGLS+
Sbjct: 6 QHTSRSQVQPPLAAPGLSM 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,256
Number of Sequences: 5004
Number of extensions: 26557
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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