Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1335
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 2.6
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 2.6
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 3.5
11_06_0204 + 21191611-21192807 27 3.5
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 27 4.6
01_07_0225 - 42126650-42127020,42127057-42127150,42127229-421275... 27 4.6
01_05_0623 - 23768426-23768794 27 4.6
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743... 27 6.1
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702... 27 6.1
08_02_1561 + 27880694-27881596 26 8.1
06_03_0279 + 19100499-19100927 26 8.1
01_06_0519 - 29993977-29994182,29994572-29994632 26 8.1
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Frame = +1
Query: 91 QYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 270
+++F G + F+ A ND V L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 271 VEIESP--------GILNGGEYRGFWVRWDSGIISAGR 360
+E++ G+ ++ +W+ G+IS G+
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQ 117
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 288 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 172
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 368 SPSRPAEIMPLS-QR----TQKPRYSPPLRIP 288
SP+ PA P S QR Q PRY PPLR P
Sbjct: 332 SPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 187 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 303
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 94 YQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGW 222
Y FP S + Q R A+D A PQ+ + ++ M+ W
Sbjct: 226 YAGFPALSETSQISRRRADDDEAAAAAQPQKVERLWMTMLPCW 268
>01_07_0225 -
42126650-42127020,42127057-42127150,42127229-42127523,
42127604-42127809,42127898-42127945,42128078-42128296
Length = 410
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 58 NVMDVATDDNLQYQFFPVSSGSVQFKVRAANDAHVALTTGPQ 183
N D T + + P+ Q +R NDA VAL T PQ
Sbjct: 235 NEYDTRTREGTTVETGPLRDRVAQELLRTVNDAGVALGTAPQ 276
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 172 TGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 264
T + S P + + GWGN S + + RT P
Sbjct: 38 TSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
>06_03_1008 +
26873805-26873891,26874038-26874107,26874237-26874334,
26874505-26874643,26874778-26874860,26875145-26875195,
26875305-26875370,26875465-26875530,26875637-26875717,
26876042-26876119,26876218-26876394,26876467-26876545,
26876752-26876870,26877029-26877430
Length = 531
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 369 FTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDA 235
F L SG A+ T P T V N A F+ + L S++ D+A
Sbjct: 371 FALDKSGWELALVTAPSTHTSRPVDNQLAGGFDKLLLDSLYEDEA 415
>05_07_0250 +
28669593-28669660,28669759-28669817,28670144-28670248,
28670983-28671019,28671446-28671542,28671700-28671781,
28671870-28671939,28672049-28672212,28672897-28672940,
28673021-28673176,28673273-28673494,28673736-28673883,
28673947-28674034,28675032-28675159,28675259-28675323,
28675380-28675426,28675427-28675539,28676003-28676019
Length = 569
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 229 AKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIIS 351
AKS RK R K D+V +++ I+ G W++ S +I+
Sbjct: 247 AKSSKRKKRRKDDEVMMDNDQIMIPGNVYQTWLKDPSSLIT 287
>08_02_1561 + 27880694-27881596
Length = 300
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 264 GLGSIFPDDALSVSPASNHHLIHRIRFLRA 175
GL F DDALS S HH++H+ R R+
Sbjct: 67 GLAVAF-DDALSPSSRCAHHVLHKKRGSRS 95
>06_03_0279 + 19100499-19100927
Length = 142
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 344 MPLSQRTQKPRYSPPLRIP 288
+PL+ R PR SPPL +P
Sbjct: 112 LPLATRAPLPRRSPPLALP 130
>01_06_0519 - 29993977-29994182,29994572-29994632
Length = 88
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 208 MIGGWGNAKSVIRKNRTKPDKVEIESPGILN 300
M GGWGN+ + P+K E + G L+
Sbjct: 26 MFGGWGNSGRITDVGARGPEKGEAGARGFLS 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,449
Number of Sequences: 37544
Number of extensions: 185438
Number of successful extensions: 558
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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