Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1335
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   0.29 
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   0.67 
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.89 
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   1.6  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             27   3.6  
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)                     27   3.6  
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   4.8  
SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)                  27   4.8  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         26   8.3  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 258 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 127
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 181 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 306
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 175 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 312
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 115 SGSVQFKVRAANDAHVALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 273
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 274 EIESPGILNG 303
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 223 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 330
           GNA  VI      P+ +E E PG L   + R  W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819


>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
          Length = 249

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 255 SIFPDDALSVSPASNHHLIHRIRFLRAC 172
           S+ P+ A+S++  S HH   R  FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181


>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 615

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +1

Query: 37  SLTTIMANVMDVATDDNLQYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIG 216
           S TT+ ++V++ A D         +   ++  +  A N A   ++ G   S+ M+EV++ 
Sbjct: 197 STTTVGSSVIEKAMD------LADLDEATISSRHPATNAALTLVSLGSVTSNLMHEVVVD 250

Query: 217 GWGNAKSVIRKNRTKPDKVEIES 285
             GN+ S +     +   V ++S
Sbjct: 251 ESGNSSSFLSSTPVEGPSVTVDS 273


>SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)
          Length = 311

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 208 MIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 309
           ++GG GN  ++ R + T P+ V  E P  L  G+
Sbjct: 125 LMGGNGNTGALTRTSNTNPNMVFEEKPAYLADGD 158


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 223 GNAKSVIRKNRTKPDKVEIESPGILN 300
           G +K+++ ++  KPD  +I  PGI++
Sbjct: 226 GKSKTILDESTVKPDSEDIVVPGIID 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,659
Number of Sequences: 59808
Number of extensions: 194170
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)