Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1335
         (369 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   2.1  
AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.       24   2.1  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   3.6  
AY331403-1|AAQ97584.1|  103|Anopheles gambiae agCP14332 protein.       22   6.4  
AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative odorant-b...    22   8.4  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    22   8.4  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    22   8.4  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    22   8.4  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 273 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 303


>AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.
          Length = 101

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 153 CPRRAHDRPARIGSYV*GDDWRLGKR 230
           C RR    PAR    +  D WR+G R
Sbjct: 11  CTRRNRTAPARNYDTIPIDRWRVGNR 36


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +1

Query: 46  TIMANVMDVATDDNLQYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGW 222
           T  A V    TD+N+QY +       + F V  +ND  ++     +++ P        W
Sbjct: 473 TFSARVGRGLTDENMQYMYRKAYRDKLSFSV--SNDQMISFAQFCKDTTPECNYTFWEW 529


>AY331403-1|AAQ97584.1|  103|Anopheles gambiae agCP14332 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 120 ISSVQSQSSE*CPRRAHDRPARIGSYV*GDDWRLGKR 230
           + S+ + ++  C RR    PAR    +  D WR+  R
Sbjct: 1   MKSLHTTTTMTCTRRNRTAPARNYDTIPIDRWRVSNR 37


>AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative
           odorant-binding protein OBPjj10 protein.
          Length = 207

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 311 YSPPLRIPGLSIST 270
           + PP R+PG  +ST
Sbjct: 48  FPPPCRVPGWRLST 61


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 237 ALSVSPASNHHLIHRIR 187
           +L +SP +NHHL H+ R
Sbjct: 46  SLGMSPYTNHHL-HQTR 61


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 237 ALSVSPASNHHLIHRIR 187
           +L +SP +NHHL H+ R
Sbjct: 46  SLGMSPYTNHHL-HQTR 61


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 223 GNAKSVIRKNRTKP 264
           G+  +V+RKNR KP
Sbjct: 213 GSWSTVVRKNRRKP 226


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,442
Number of Sequences: 2352
Number of extensions: 6028
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 27944475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)