Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1335
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    30   0.59 
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   3.2  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    27   5.5  
AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 368 SPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 213
           +PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 187 NPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 113 ETGKNWY*RLSSVATSMTLAMIVV 42
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 187 SDPMYEVMIGGWGNAKSVIRKNRTK 261
           S+P YEV++GG   A  V+ +N+ K
Sbjct: 334 SNPHYEVVLGGKKTANFVVEENKIK 358


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -1

Query: 363 LASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIR 187
           L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH+I+
Sbjct: 265 LSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIHKIK 315


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 244 RKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAG 357
           +K   KP + E+  P +L+ GE       +D+G++S+G
Sbjct: 251 KKEEAKPKEQELVEPLVLSEGESIDELEDFDTGLLSSG 288


>AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical
           protein C04F1.1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 321 KTTIFPSVKNSGAFNFNLIGLG 256
           K  +FP + N+G  NF  IG+G
Sbjct: 107 KEVLFPKIFNAGPHNFFTIGVG 128


>Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 332 QRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 186
           +R  + +Y     +P   +  + G V + L++   FP  P+ + YIG D
Sbjct: 121 ERNGRVKYFDTKFLPLWFMIPILGGVSWTLVSWFCFPMNPVTSGYIGPD 169


>Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 332 QRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 186
           +R  + +Y     +P   +  + G V + L++   FP  P+ + YIG D
Sbjct: 121 ERNGRVKYFDTKFLPLWFMIPILGGVSWTLVSWFCFPMNPVTSGYIGPD 169


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 357 SSGDNAAIPTNPKTTIFPSVKNS 289
           S  D  ++PT PKT I P  +NS
Sbjct: 559 SDSDLFSLPTKPKTPIAPKNRNS 581


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,541,835
Number of Sequences: 27780
Number of extensions: 147848
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)