Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1335
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.66 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.66 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.66 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 192
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 284 LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWA---SFAALTLN*TDPL 114
           LSIS L  L +FFL+     P   +    +G      +V  T +   + A L +N   P+
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 363  LASSGDNAAIPTNPKTTIFPSVK 295
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 196  MYEVMIGGWGNAKSVIRKNRTKPDK 270
            ++   +G W  +K  +R  R KP K
Sbjct: 1017 VFRESVGAWAYSKYGLRFLRAKPGK 1041



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 284  LSISTLSGLVLFFLMTLLAF 225
            L  +TLSG+++  ++ +LAF
Sbjct: 997  LVAATLSGVLVLLVIIVLAF 1016


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 354 SGDNAAIPTNPKTT-IFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNH-HL 202
           SG   A P +   + +  S  + G  + NL+    + P+ +L  S AS+H HL
Sbjct: 238 SGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,601
Number of Sequences: 438
Number of extensions: 2188
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)