Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1335
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put... 29 0.73
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 29 1.3
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 2.2
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 27 2.9
At3g49590.2 68416.m05420 expressed protein 27 3.9
At3g49590.1 68416.m05419 expressed protein 27 3.9
At3g15030.2 68416.m01902 TCP family transcription factor, putati... 26 6.8
At3g15030.1 68416.m01901 TCP family transcription factor, putati... 26 6.8
At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related... 26 6.8
>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 851
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 190 DPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAG 357
D ++ + +G ++S + T+ D V +PG L+ YR W+ S + S G
Sbjct: 675 DEHFQAKLADFGLSRSFPLEGETRVDTVVAGTPGYLDPEYYRTNWLNEKSDVYSFG 730
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 205 VMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 309
V+IGGW + ++KN P + +P +GG+
Sbjct: 50 VVIGGWVKSARAVKKNSPPPPLPVVAAPSPSSGGD 84
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 356 PAEIMPLSQRTQKPRYSPPLRIP 288
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 311 YSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWASFA 144
+S PL + L ++ + + FF+ L F QP +I+ +G GP V FA
Sbjct: 35 FSLPLFV--LQLTLVVVVTRFFVFILKPFRQPRVISEILGGIVLGPSVLGRSTKFA 88
>At3g49590.2 68416.m05420 expressed protein
Length = 603
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -2
Query: 341 PLSQRTQKPRYSPPLRIPG---LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPV 171
P+++ ++ R++P PG S++ S L F L + P P IIT Y+GS + P+
Sbjct: 196 PVTETMKEFRFAPVEVPPGRLCASVTYRSDLSDFNLGAHITLP-PRIITDYVGSPATDPM 254
>At3g49590.1 68416.m05419 expressed protein
Length = 603
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -2
Query: 341 PLSQRTQKPRYSPPLRIPG---LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPV 171
P+++ ++ R++P PG S++ S L F L + P P IIT Y+GS + P+
Sbjct: 196 PVTETMKEFRFAPVEVPPGRLCASVTYRSDLSDFNLGAHITLP-PRIITDYVGSPATDPM 254
>At3g15030.2 68416.m01902 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 369 FTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 196
F + +G A P+N +++ P +S + + S FP S SNH+L+H
Sbjct: 151 FGVGFNGGGAEHPSNNESSFLPPSMDSDSIADTI---KSFFPVIGSSTEAPSNHNLMH 205
>At3g15030.1 68416.m01901 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 369 FTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 196
F + +G A P+N +++ P +S + + S FP S SNH+L+H
Sbjct: 151 FGVGFNGGGAEHPSNNESSFLPPSMDSDSIADTI---KSFFPVIGSSTEAPSNHNLMH 205
>At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related
contains Pfam profile: PF04504 protein of unknown
function, DUF573; similar to storekeeper protein
GI:14268476 [Solanum tuberosum]
Length = 376
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 215 EAGETLRASSGKIEPSPIRLKLKAPEFLT 301
EAGE SS E PI++++K+P T
Sbjct: 26 EAGEASDDSSSSEEDVPIKIRIKSPSATT 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,317,748
Number of Sequences: 28952
Number of extensions: 147700
Number of successful extensions: 480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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