Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1333
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   2.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.7  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   6.2  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 527 LTETKNKL*DILKYVNEIYYTYDNKKSSSTSYNDS 631
           LTE  +K    LK   ++Y+ YDN  SS T + ++
Sbjct: 150 LTEEMSKTLRALKEEKKMYFNYDNFLSSQTVHEEN 184


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 447 QCDIETRQFCLETFDITINSKRFDHLCKSW 358
           Q +    Q+ L T DIT+N+++   + K W
Sbjct: 856 QIEPTNSQYFLRTLDITLNNEKLKSVAKFW 885


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 213 SICRYTRKFTGKKGDKYEICIHQS 284
           S  R T+K TG++ DKY + I Q+
Sbjct: 166 SYMRQTKKMTGRELDKYNLKIRQA 189


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +1

Query: 58  DMQGNI-DRIKKNYKFD 105
           D+QG I DR+KK Y+FD
Sbjct: 412 DIQGTILDRVKKGYQFD 428


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 274 FTKAYEGSVKKYHSWVTQQLFIFICK 351
           F  AY G V     W T +L  F+CK
Sbjct: 101 FNPAYLGIVNSGTQWSTDELRYFLCK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,674
Number of Sequences: 5004
Number of extensions: 49957
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)