Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1333
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0205 + 15167902-15168019,15168107-15168162,15168349-151684... 52 5e-07
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 45 5e-05
08_01_0061 - 428885-428920,429021-429164,429376-429541,429612-42... 40 0.002
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 31 0.91
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 30 2.1
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 4.9
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 28 8.5
>07_03_0205 +
15167902-15168019,15168107-15168162,15168349-15168479,
15168567-15168702,15169145-15169303,15169363-15169431
Length = 222
Score = 52.0 bits (119), Expect = 5e-07
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Frame = +1
Query: 16 LVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKAP----VTEGV 177
++++ G+A + VK D+ GNI R++ Y D + L ++ EI++ A T G+
Sbjct: 38 VLDKFGSAMSIVKNDIGGNITRLETKYASDPSKYEQLHSMVKVEISSKTAKSSSSCTNGL 97
Query: 178 LWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLF 336
LWL RA+ F +F NL + M + AY ++KK+H W+ F
Sbjct: 98 LWLTRAMDFLVALF----HNLVQHPDWQMSQACSDAYSKTLKKWHGWLASSSF 146
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Frame = +1
Query: 7 LVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKA----PVT 168
L+ +++++G A ++ D+Q NI+R+++ Y D + L ++ +E++ G A
Sbjct: 94 LLQVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKVDSCA 153
Query: 169 EGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFIC 348
+LWL R+ + F + + LE +K + AY ++K +H W++ +
Sbjct: 154 RAILWLTRS-MDFTIALLQRLEEDSDQK--CFAQLVESAYMVTLKPWHGWISSAAYKIAM 210
Query: 349 KMSP 360
K+ P
Sbjct: 211 KLIP 214
>08_01_0061 -
428885-428920,429021-429164,429376-429541,429612-429742,
429884-429939,430513-430687
Length = 235
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Frame = +1
Query: 7 LVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDEN--SCLLMLMLEEINNGKAP----VT 168
++++++ +G ++ D+Q N+ R++ D + S L ++ EE+ G + T
Sbjct: 54 IIHVLDEIGPTLLVLRQDIQQNVQRLQDVLARDPSKYSSLTAIVTEEVEEGTSKKANSCT 113
Query: 169 EGVLWLNRALL-FFELVFVD----ILENL-QAKKEINMKYVFTKAYEGSVKKYHSWVTQQ 330
+LWL A+L + ++ +LE L + +++ + KAY ++K +H W++
Sbjct: 114 RAILWLASAVLRILPIRSINFSKHLLEGLLNTCDQSSLREIVEKAYITTLKPWHGWISSA 173
Query: 331 LFIFICKMSP 360
+ K+ P
Sbjct: 174 AYRVAQKLIP 183
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 31.1 bits (67), Expect = 0.91
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 629 NHCNWCLNFFYYHM 588
N N+CLNFF+YHM
Sbjct: 414 NRANFCLNFFFYHM 427
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 313 SWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLAS 432
+W ++ +F++ + FA ++++ VDGD+ S+ KL S
Sbjct: 340 AWFSRDIFLYRLSKTDFFAVILEATVVDGDLLSWTRKLKS 379
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.7 bits (61), Expect = 4.9
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 235 NLQAKKEINMKYVFTKAYEGSVK---KYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDI 405
+L KK++N+KY + G K KYHS +T F F + +S +D I
Sbjct: 256 SLDTKKDVNLKYKDDRLILGKAKIFSKYHSEITYYNF--------NFYEAGRSISLDTGI 307
Query: 406 KS-FETKLASFNITLHLNRCKIDDFFKDNN 492
+ + S N + LNR K + + NN
Sbjct: 308 SNELSQEEISINDKMKLNREKTNSSDEYNN 337
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 419 VSKLLISPSTPKDLIICAKVGDILQ 345
V + LI P P+D +C VGDIL+
Sbjct: 61 VQRRLIRPCPPRDDSVCWAVGDILE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,149
Number of Sequences: 37544
Number of extensions: 245321
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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