Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1333
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)                  58   7e-09
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)                    44   9e-05
SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)         31   0.71 
SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)                 29   5.0  
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   8.7  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)
          Length = 333

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
 Frame = +1

Query: 34  TAFAPVKFDMQGNIDRIKKNYKFDENS--CLLMLMLEEINN----GKAPVTEGVLWLNRA 195
           TAFAPVK D+ G+I +I   +  D  +   L  ++ +E+ +     K   T+ +LWL RA
Sbjct: 4   TAFAPVKMDIGGDIRKISSKFDTDPKAFYTLQNIVYQELKSNTCTAKNSATDALLWLKRA 63

Query: 196 LLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLF 336
           L F ++   ++++  Q     ++      AYE +++KYH WV + +F
Sbjct: 64  LEFMQIFLAEVVKGRQ-----DLAVAAGIAYEKTLRKYHGWVVRGVF 105


>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
          Length = 389

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
 Frame = +1

Query: 76  DRIKKNYKFDEN--SCLLMLMLEEINN----GKAPVTEGVLWLNRALLFFELVFVDILEN 237
           ++++K Y+ D      L  ++ +EI N     K   T+ +LWL RAL F   +   + E 
Sbjct: 107 EKLRKIYETDPARFKTLQDVVEKEIENKTTKAKNSGTDALLWLRRALHF---IIAFLKEV 163

Query: 238 LQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSPTFAQMIKSF-GVDGDIKSF 414
           L    E+      TKAYE ++KKYH ++ + +F    K  P     +K+  G + +  + 
Sbjct: 164 LVGNSELAP--CATKAYEKTLKKYHGFLVRGVFSLAMKAVPYRKDFMKALGGAEEEQYTV 221

Query: 415 ETKLASFNITLHLNRCKIDDFFKDNN 492
              + +F   L  N   + +F+ +NN
Sbjct: 222 MEDIQNFVDVLDSNLDVLTEFYAENN 247


>SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)
          Length = 281

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
 Frame = +1

Query: 58  DMQGNIDRIKKNYKFDENSCLLMLMLEEINNGKAPVTEGVLWLNRALLFFELVFVDILEN 237
           D Q N+  I  N + ++ SC + L L+   NG A V   +     + +      +D+L N
Sbjct: 75  DCQDNLTMIHLNSESEKESCTVNLPLKRTGNGNAMVRRRI-----SQIIKPAEGLDVLIN 129

Query: 238 LQAKKEINMKYVFTKAYEGSV-KKYHSWVTQQLFIFICKMSPTFAQMI 378
              K E   +Y     +   V  K   W+   L +F C ++    ++I
Sbjct: 130 RAKKDEEKEQYREEWKFAAHVLNKVFMWIVLLLVVFNCLVNGKEVRLI 177


>SB_49827| Best HMM Match : zf-C2H2 (HMM E-Value=7e-07)
          Length = 279

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 87  FYSINISLHIKF--YRCKSCAKAFNKVDQIR 1
           +   ++ +H K   YRC+ C+KAFN+V   R
Sbjct: 242 YLKAHLRIHTKEMPYRCRFCSKAFNQVGNCR 272


>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 52  KFDMQGNIDRIKKNYKFDENSCLLMLMLEEINNGKAPVTEGVLWLNRALLF--FELVFVD 225
           K D++    +I ++YK DE+  LL+    +  +G   V E +   + +L F  F  V  +
Sbjct: 432 KLDLKYRFMKIGRHYKMDEDRLLLLKQHNDTKSGAEGVLEWIFSSHPSLHFSGFIKVLGE 491

Query: 226 ILENLQAKKEINMKYV 273
           +  N  A + +  +YV
Sbjct: 492 LDMNDVANEMLKEEYV 507


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 301 KKYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSF--ETKLASF-NITLHLNRCKID 471
           ++Y  WV+Q L +    + P F Q+   F    DI +F  E    +F NI + L   K+ 
Sbjct: 351 QEYIQWVSQYLVMKRASIEPNFHQLYIDFMEALDIPNFANEVLKETFRNIKVLLQSEKVP 410

Query: 472 DFFKDNNLFSD 504
             F D +L  +
Sbjct: 411 ANFSDRSLLKN 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,423
Number of Sequences: 59808
Number of extensions: 322143
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)