Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1333
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003446-1|AAO39449.1|  205|Drosophila melanogaster RH52220p pro...    63   3e-10
AE014298-2154|AAN09354.1|  205|Drosophila melanogaster CG6299-PB...    63   3e-10
AE014298-2153|AAO41657.1|  205|Drosophila melanogaster CG6299-PA...    63   3e-10

>BT003446-1|AAO39449.1|  205|Drosophila melanogaster RH52220p
           protein.
          Length = 205

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
 Frame = +1

Query: 4   DLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEIN-NGKAPVTEGVL 180
           ++V ++E  G  F PV  DM GNI+++ K Y  D      +  L  +N N        +L
Sbjct: 40  EIVTVIESFGKLFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALL 99

Query: 181 WLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSP 360
           WL R L      F +I  + QAK+   +K     AYE ++K YH ++ Q     I    P
Sbjct: 100 WLKRGLQLICTFFENIYNDAQAKEA--LKQHLQDAYERTLKPYHGFIVQSTIKIIYSWVP 157

Query: 361 TFAQMIKSFGVDGDIKSFETKLASFNITLHLNRCKIDDFFKDNNL 495
           T +Q++   GV    ++ E  L SF   +  +   ID   K +NL
Sbjct: 158 TRSQLLGQ-GV-AQAENIEV-LTSFLPRMRAHLDSIDALLKAHNL 199


>AE014298-2154|AAN09354.1|  205|Drosophila melanogaster CG6299-PB,
           isoform B protein.
          Length = 205

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
 Frame = +1

Query: 4   DLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEIN-NGKAPVTEGVL 180
           ++V ++E  G  F PV  DM GNI+++ K Y  D      +  L  +N N        +L
Sbjct: 40  EIVTVIESFGKLFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALL 99

Query: 181 WLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSP 360
           WL R L      F +I  + QAK+   +K     AYE ++K YH ++ Q     I    P
Sbjct: 100 WLKRGLQLICTFFENIYNDAQAKEA--LKQHLQDAYERTLKPYHGFIVQSTIKIIYSWVP 157

Query: 361 TFAQMIKSFGVDGDIKSFETKLASFNITLHLNRCKIDDFFKDNNL 495
           T +Q++   GV    ++ E  L SF   +  +   ID   K +NL
Sbjct: 158 TRSQLLGQ-GV-AQAENIEV-LTSFLPRMRAHLDSIDALLKAHNL 199


>AE014298-2153|AAO41657.1|  205|Drosophila melanogaster CG6299-PA,
           isoform A protein.
          Length = 205

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
 Frame = +1

Query: 4   DLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEIN-NGKAPVTEGVL 180
           ++V ++E  G  F PV  DM GNI+++ K Y  D      +  L  +N N        +L
Sbjct: 40  EIVTVIESFGKLFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALL 99

Query: 181 WLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSP 360
           WL R L      F +I  + QAK+   +K     AYE ++K YH ++ Q     I    P
Sbjct: 100 WLKRGLQLICTFFENIYNDAQAKEA--LKQHLQDAYERTLKPYHGFIVQSTIKIIYSWVP 157

Query: 361 TFAQMIKSFGVDGDIKSFETKLASFNITLHLNRCKIDDFFKDNNL 495
           T +Q++   GV    ++ E  L SF   +  +   ID   K +NL
Sbjct: 158 TRSQLLGQ-GV-AQAENIEV-LTSFLPRMRAHLDSIDALLKAHNL 199


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,751,587
Number of Sequences: 53049
Number of extensions: 475182
Number of successful extensions: 1275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)