Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1333
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical...    56   3e-08
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    55   4e-08
AF039711-9|ABS19467.1|  281|Caenorhabditis elegans Temporarily a...    36   0.029
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    34   0.088
Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical pr...    31   0.62 

>AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14a protein.
          Length = 231

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
 Frame = +1

Query: 19  VERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NNGKAPV-TEGVLW 183
           V  LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + GK  + TEG+LW
Sbjct: 57  VSFLGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHGGKFGIATEGLLW 116

Query: 184 LNRALLFFELVFVDIL----ENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICK 351
           L R L F   +  +++      L   K  ++      AY  S+K++H ++ +Q F  +  
Sbjct: 117 LKRGLQFMLELLTEMVTAYNSGLPRDKTEDLSGAVATAYGKSLKRHHGFIAKQAFKVVTM 176

Query: 352 MSPTFAQMIKS 384
             P   Q++K+
Sbjct: 177 AVPYRRQILKA 187


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
 Frame = +1

Query: 28  LGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEI----NNGKAPV-TEGVLWLNR 192
           LG  F+ V+ D+QGN+D+++  ++ D+     +  L +     + GK  + TEG+LWL R
Sbjct: 133 LGATFSLVRKDIQGNVDKVRVRFEKDQEGQKYLQQLIDADLAEHGGKFGIATEGLLWLKR 192

Query: 193 ALLFFELVFVDIL----ENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSP 360
            L F   +  +++      L   K  ++      AY  S+K++H ++ +Q F  +    P
Sbjct: 193 GLQFMLELLTEMVTAYNSGLPRDKTEDLSGAVATAYGKSLKRHHGFIAKQAFKVVTMAVP 252

Query: 361 TFAQMIKS 384
              Q++K+
Sbjct: 253 YRRQILKA 260


>AF039711-9|ABS19467.1|  281|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 296 protein.
          Length = 281

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
 Frame = +1

Query: 4   DLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEIN-----NGKAPVT 168
           +L   +  LG  F  V+ D++  ID +K+ +  +      ++ L         NGK    
Sbjct: 110 ELCKFIGMLGKIFEFVEKDVREKIDLLKELHTANPEGYKTVVALVHSEKPMEKNGKESGA 169

Query: 169 EGVLWLNRALLFF-ELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFI 345
             +L LNRAL F  E ++  +     A  + ++  +  + Y+G++ K+H W+ +      
Sbjct: 170 VAILHLNRALEFIVEFMYAAVA----ATNDDSIPKICKECYDGTLAKHHPWIIRTAVKVA 225

Query: 346 CKMSPTFAQMI 378
               PT  +M+
Sbjct: 226 VYTLPTREKML 236


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 328 QLFIFICKMSPTFAQMIKSFGVDGDIKSF-ETKLASFNITLHLNRCKIDDFFKDNN 492
           +L IF+    P FA+++     +G IK+F +T LA FN  +  +R +ID  F+D N
Sbjct: 209 KLHIFLAMNIPIFAKLLPESLYEGPIKTFRDTTLAFFNKQIEAHRHRID--FEDLN 262


>Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical
           protein K08E4.2 protein.
          Length = 213

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
 Frame = +1

Query: 31  GTAFAPVKFDMQGNIDRIKKNYKFDENS--CLLMLMLEEINNG----KAPVTEG---VLW 183
           GT F+ V  D+   ++++ +    D +S   ++ +  +E  NG    + P   G   ++ 
Sbjct: 47  GTIFSFVVKDVTAKLEKLTQMRSSDPDSYRTIIGMATKESENGTIRNQKPNRSGTGHLMV 106

Query: 184 LNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSW 318
           LNRAL F     +D+L+ +    + N+  +   +Y+  + + HSW
Sbjct: 107 LNRALEFV----IDLLDGVFTSNDENVSTIARSSYDKHLSQLHSW 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,773
Number of Sequences: 27780
Number of extensions: 275061
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)