Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1333
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.8  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 99  FVIFFYSINISLHIKFYRCKSCAKAFNKVD 10
           F+  FYS +  L      C+ C K+   +D
Sbjct: 357 FIYAFYSADFRLAFWRLTCRKCFKSRTNLD 386


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 629 NHCNWCLNFFY 597
           +HC  C NFFY
Sbjct: 192 SHCVVCQNFFY 202


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 279 GEYIFHIYLLFCL 241
           G Y+FH Y+  CL
Sbjct: 245 GYYLFHTYIPTCL 257


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 57  KFYRCKSCAKAFNKVDQIR 1
           K Y CK+C K F    Q++
Sbjct: 202 KPYVCKACGKGFTCSKQLK 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,374
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)