Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1332
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.7  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 368 PRLINVSLPYFGDTFT 321
           P+ + V +P++G TFT
Sbjct: 259 PKKLIVGIPFYGRTFT 274


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 588 LSPIHSNLNLTYSYELSNESPHQN 517
           LSP+   L++ + YE  ++  H++
Sbjct: 263 LSPLGHTLSMNHKYEKIDKEEHES 286


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 579 IHSNLNLTYS---YELSNESP--HQNPRLSWNRTHNN 484
           I++   L+Y+   Y  SN  P  HQN    + RTH N
Sbjct: 77  INTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHEN 113


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 579 IHSNLNLTYS---YELSNESP--HQNPRLSWNRTHNN 484
           I++   L+Y+   Y  SN  P  HQN    + RTH N
Sbjct: 77  INTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHEN 113


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 579 IHSNLNLTYS---YELSNESP--HQNPRLSWNRTHNN 484
           I++   L+Y+   Y  SN  P  HQN    + RTH N
Sbjct: 77  INTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHEN 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,428
Number of Sequences: 336
Number of extensions: 2673
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)