Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1332
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   4.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   4.0  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   7.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   9.3  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.3  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   9.3  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   EPKPTSPARGAPCRSTNEALARR 77
           EP P S A  +P + + EALA R
Sbjct: 64  EPSPASSASASPVKKSAEALAER 86


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 280 KALGVDFILIVIICVNVSPKYGSDTLINL 366
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 618 NGIGFLTYRVLSPIHSNLNLTYSYELSNESPHQNPRL 508
           N +G    + LS + S  +LT+ Y  S+ + H N R+
Sbjct: 350 NDVGCRNVQFLSSLISQQDLTFFYPFSSFTVHSNVRI 386


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 39  APCRSTNEALARRGRHGTTV 98
           A C ST  +L R+ RHG TV
Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 597 YRVLSPIHSNLNLTYSYELSNESPHQNPRLSWNRTHNN 484
           Y VL P HS+    YS+  SN  P Q+P L+  + + N
Sbjct: 147 YSVL-PDHSSQPNAYSFTGSNILPTQSPSLNQMQDYQN 183


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 627 ILRNGIGFLTYRVLSPIHSNLNLTYSYE-LSNESPHQNPRLSWNRTHNNETI 475
           +LR+ + F  Y  L  + S      S++ L ++SP  +  L W+ T + E++
Sbjct: 209 VLRDFVTFEQYIPLMFLPSPFETILSFDNLKSDSPSSDLHLGWDHTVSKESM 260


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  RGAPCRSTNEALARRGRHGTTVAYIV 110
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -1

Query: 627 ILRNGIGFLTYRVLSPIHSNLNLTYSYELSNESPHQNPRLSWNR 496
           +L   +    Y +  PI S+  +  S EL   +P+Q     W R
Sbjct: 461 VLAVAVDETVYFITPPIFSDEQIEASKELFTSAPYQESSAIWRR 504


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  RGAPCRSTNEALARRGRHGTTVAYIV 110
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,293
Number of Sequences: 5004
Number of extensions: 46379
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)