BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1332 (642 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 4.0 SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 4.0 SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.3 SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 7.0 SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.0 SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.3 SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 9.3 SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 9.3 SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 9.3 >SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 425 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 9 EPKPTSPARGAPCRSTNEALARR 77 EP P S A +P + + EALA R Sbjct: 64 EPSPASSASASPVKKSAEALAER 86 >SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 280 KALGVDFILIVIICVNVSPKYGSDTLINL 366 K LG+DF + +++C +YGS+ L +L Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175 >SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 25.8 bits (54), Expect = 5.3 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -1 Query: 618 NGIGFLTYRVLSPIHSNLNLTYSYELSNESPHQNPRL 508 N +G + LS + S +LT+ Y S+ + H N R+ Sbjct: 350 NDVGCRNVQFLSSLISQQDLTFFYPFSSFTVHSNVRI 386 >SPCC1393.08 |||transcription factor, zf-GATA type |Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 25.4 bits (53), Expect = 7.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 39 APCRSTNEALARRGRHGTTV 98 A C ST +L R+ RHG TV Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439 >SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 25.4 bits (53), Expect = 7.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 597 YRVLSPIHSNLNLTYSYELSNESPHQNPRLSWNRTHNN 484 Y VL P HS+ YS+ SN P Q+P L+ + + N Sbjct: 147 YSVL-PDHSSQPNAYSFTGSNILPTQSPSLNQMQDYQN 183 >SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 845 Score = 25.0 bits (52), Expect = 9.3 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -1 Query: 627 ILRNGIGFLTYRVLSPIHSNLNLTYSYE-LSNESPHQNPRLSWNRTHNNETI 475 +LR+ + F Y L + S S++ L ++SP + L W+ T + E++ Sbjct: 209 VLRDFVTFEQYIPLMFLPSPFETILSFDNLKSDSPSSDLHLGWDHTVSKESM 260 >SPBC336.10c |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 25.0 bits (52), Expect = 9.3 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = +3 Query: 33 RGAPCRSTNEALARRGRHGTTVAYIV 110 +G PC+ + + ++ G+HG +IV Sbjct: 36 KGRPCKIVDMSTSKTGKHGHAKVHIV 61 >SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 25.0 bits (52), Expect = 9.3 Identities = 12/44 (27%), Positives = 19/44 (43%) Frame = -1 Query: 627 ILRNGIGFLTYRVLSPIHSNLNLTYSYELSNESPHQNPRLSWNR 496 +L + Y + PI S+ + S EL +P+Q W R Sbjct: 461 VLAVAVDETVYFITPPIFSDEQIEASKELFTSAPYQESSAIWRR 504 >SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 25.0 bits (52), Expect = 9.3 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = +3 Query: 33 RGAPCRSTNEALARRGRHGTTVAYIV 110 +G PC+ + + ++ G+HG +IV Sbjct: 36 KGRPCKIVDMSTSKTGKHGHAKVHIV 61 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,450,293 Number of Sequences: 5004 Number of extensions: 46379 Number of successful extensions: 103 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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