Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECC1F3 Cluster: FERM and PDZ domain containing 1...    33   7.7  
UniRef50_Q9RST3 Cluster: Chromosome partitioning ATPase, putativ...    33   7.7  
UniRef50_Q0JBB9 Cluster: Os04g0543500 protein; n=4; Oryza sativa...    33   7.7  
UniRef50_A6SM25 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_UPI0000ECC1F3 Cluster: FERM and PDZ domain containing 1;
            n=1; Gallus gallus|Rep: FERM and PDZ domain containing 1
            - Gallus gallus
          Length = 1523

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 8    SQPTVAPLPQTEASPPVIDE--EEWNPPPQKKRK---SNLTKMFLDIDRKTREYASERDM 172
            S P   PLP   + PP +D+  EE  P PQ +R    +N +   ++++  T E  S  D+
Sbjct: 841  SWPPTPPLPAQPSDPPSLDKDAEEGTPAPQAQRDTAGTNSSSGVMEMEPDTMETKSVTDL 900

Query: 173  V 175
            V
Sbjct: 901  V 901


>UniRef50_Q9RST3 Cluster: Chromosome partitioning ATPase, putative,
           ParA family; n=1; Deinococcus radiodurans|Rep:
           Chromosome partitioning ATPase, putative, ParA family -
           Deinococcus radiodurans
          Length = 331

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 32  PQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKTREYASERDMV 175
           PQT A+  ++ EE W    +  R   L  +FLD+   TR +  ER +V
Sbjct: 58  PQTNATLALVGEERWEQADE--RGQTLAHLFLDLLNGTRNFNPERAIV 103


>UniRef50_Q0JBB9 Cluster: Os04g0543500 protein; n=4; Oryza
           sativa|Rep: Os04g0543500 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 260

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 5   SSQPTVAPLPQTEASPPVIDEEEWNPPPQKKR 100
           S+ P+ +P P   ASPP +     +PPP+K+R
Sbjct: 100 SASPSQSPSPPPPASPPPLPPAPSSPPPKKRR 131


>UniRef50_A6SM25 Cluster: Putative uncharacterized protein; n=1;
            Botryotinia fuckeliana B05.10|Rep: Putative
            uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1002

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 8    SQPTVAPLPQTEASPPVIDEEEWNPPPQKKRKSNLTKMFLDIDRKTREYASERDMV 175
            S+ T+ P PQ+  +PP      ++ PP K   S L   +   D KT+ +  E+D +
Sbjct: 931  SKQTIKPRPQSYPAPPKPKTVTFSTPPPKSTPSPLAPAYTSHDSKTK-FEMEQDEI 985


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,984,084
Number of Sequences: 1657284
Number of extensions: 8606525
Number of successful extensions: 28169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28037
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)