Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1331
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    29   0.025
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.8  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 14  PTVAPLPQTEASPPVIDEEEWNPPPQKKRKS-NLT 115
           PT  P P T ASPP ++ ++ +P  Q  R + N+T
Sbjct: 221 PTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNIT 255


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 2    TSSQPTVAPLPQTEASPPVIDEEEWNPPP 88
            T  Q T+ P+ +   S   ++EE    PP
Sbjct: 1769 TGQQETIPPIDEEPPSVEAVEEEREEAPP 1797


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 73  LLFVNDWRGSLSLWQWSHC 17
           LL   DW  +  +W W  C
Sbjct: 397 LLLDADWSVNAGMWMWLSC 415


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 369 LIILFYFTNHYIF 407
           LI+L  FT+H+IF
Sbjct: 235 LILLLMFTSHFIF 247


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 462 WIKLIDFIHNFTFVY*SCKKYSDW*NKI 379
           WI L + +    F Y  C +   W NK+
Sbjct: 160 WIPLCNSVTFSNFGYKQCVENRKWQNKV 187


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 462 WIKLIDFIHNFTFVY*SCKKYSDW*NKI 379
           WI L + +    F Y  C +   W NK+
Sbjct: 393 WIPLCNSVTFSNFGYKQCVENRKWQNKV 420


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 462 WIKLIDFIHNFTFVY*SCKKYSDW*NKI 379
           WI L + +    F Y  C +   W NK+
Sbjct: 393 WIPLCNSVTFSNFGYKQCVENRKWQNKV 420


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,116
Number of Sequences: 336
Number of extensions: 2311
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)